INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EU744248 | Mycobacterium phage KBG | 53572 | 63.572 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus KBG | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_38;immunity orf_70 |
| EU744249 | Mycobacterium phage Lockley | 51478 | 63.425 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 99.150 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus lockley | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_37;immunity orf_73 |
| EU744250 | Mycobacterium phage Pukovnik | 52892 | 63.263 | Mycobacterium | Group I | Pukovnikvirus | Pukovnikvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pukovnikvirus | Pukovnikvirus pukovnik | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32;antirepressor orf_64;immunity orf_68 |
| EU744251 | Mycobacterium phage Jasper | 50968 | 63.713 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 98.180 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus jasper | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;immunity orf_72 |
| EU744252 | Mycobacterium phage DD5 | 51621 | 63.387 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 99.420 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus lockley | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_38;immunity orf_74 |
| EU770221 | Mycobacterium phage Nigel | 69904 | 68.342 | Mycobacterium | Group I | Coopervirus | Coopervirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.010 | AAI-based (high-confidence) | Coopervirus | Coopervirus nigel | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| EU770222 | Mycobacterium phage Predator | 70110 | 56.286 | Mycobacterium | Group I | Predatorvirus | Predatorvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Predatorvirus | Predatorvirus predator | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | immunity orf_40 |
| EU771092 | Bacillus phage phi29 | 19282 | 39.991 | Bacillus | Group I | Salasvirus | Salasvirus | Picovirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis | High-quality | High-quality | 98.480 | AAI-based (high-confidence) | Salasvirus | Salasvirus phi29 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| EU794049 | Bacteriophage APSE-2 | 39867 | 42.910 | Unspecified | Group I | Sendosyvirus | Sendosyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Hamiltonella defensa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sendosyvirus | Sendosyvirus APSE2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_29 |
| EU816588 | Mycobacterium phage Porky | 76312 | 62.841 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kostyavirus | Kostyavirus porky | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_48;immunity orf_51 |