INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EU676000 | Mycobacterium phage Adjutor | 64511 | 59.729 | Mycobacterium | Group I | Plotvirus | Plotvirus | Dclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 97.820 | AAI-based (high-confidence) | Plotvirus | Plotvirus plot | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| EU710883 | Erwinia phage phiEa21-4 | 84576 | 43.813 | Erwinia | Group I | Kolesnikvirus | Kolesnikvirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora | High-quality | High-quality | 99.680 | AAI-based (high-confidence) | Kolesnikvirus | Kolesnikvirus Ea214 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| EU716414 | Pseudomonas phage PB1 | 65764 | 54.928 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 99.560 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus PB1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| EU717894 | Xanthomonas phage phiL7 | 44080 | 55.640 | Xanthomonas | Group I | Eisenstarkvirus | Eisenstarkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas campestris pv. campestris | High-quality | High-quality | 99.540 | AAI-based (high-confidence) | Eisenstarkvirus | Eisenstarkvirus L7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| EU719189 | Clostridioides phage phiCD27 | 50930 | 29.327 | Clostridioides | Group I | Colneyvirus | Colneyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridioides difficile | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Colneyvirus | Colneyvirus CD27 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_44;antirepressor orf_48 |
| EU734170 | Yersinia phage Yepe2 | 38677 | 47.266 | Yersinia | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis A1122 | Complete | High-quality | 100.000 | DTR (high-confidence) | Berlinvirus | Berlinvirus berlin | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| EU734171 | Escherichia phage BA14 | 39816 | 48.777 | Escherichia | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | Berlinvirus | Berlinvirus BA14 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| EU734172 | Escherichia phage EcoDS1 | 39252 | 49.944 | Escherichia | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus EcoDS1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| EU734173 | Klebsiella phage K11 | 41181 | 53.248 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella sp. 390 | Complete | High-quality | 100.000 | DTR (high-confidence) | Przondovirus | Przondovirus K11 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| EU734174 | Escherichia phage 13a | 38841 | 48.390 | Escherichia | Group I | Teseptimavirus | Teseptimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | Teseptimavirus | Teseptimavirus 13a | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |