INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
EU246945	Lactobacillus phage Lrm1	39989	45.490	Lactobacillus	Group I	Larmunavirus	Larmunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus rhamnosus strain M1	High-quality	High-quality	95.640	AAI-based (high-confidence)	Larmunavirus	Larmunavirus Lrm1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_23;cro orf_25;cro orf_26;antirepressor orf_27
EU272036	Pseudomonas phage MP29	36632	64.329	Pseudomonas	Group I	Casadabanvirus	Casadabanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PA14	High-quality	High-quality	95.470	AAI-based (high-confidence)	Casadabanvirus	Casadabanvirus MP29	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_1;integrase orf_5
EU272037	Pseudomonas phage MP38	36885	64.514	Pseudomonas	Group I	Casadabanvirus	Casadabanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PA14	High-quality	High-quality	97.020	AAI-based (high-confidence)	Casadabanvirus	Casadabanvirus MP38	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_1;integrase orf_6
EU307292	Burkholderia phage Bups phi1	19870	64.600	Burkholderia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Burkholderia pseudomallei NCTC 13178	Low-quality	Genome-fragment	38.160	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
EU311208	Escherichia phage Min27	63395	49.504	Escherichia	Group I	Traversvirus	Traversvirus	Sepvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7 str. Min27	High-quality	High-quality	96.660	AAI-based (high-confidence)	Traversvirus	Traversvirus min27	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1;cro orf_28;cro orf_29;antirepressor orf_41;antirepressor orf_55;antirepressor orf_93
EU330206	Escherichia phage phiEco32	77554	42.274	Escherichia	Group I	Kuravirus	Kuravirus	Gordonclarkvirinae	Mtkvariviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	Complete	High-quality	100.000	DTR (high-confidence)	Kuravirus	Kuravirus phiEco32	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
EU340421	Lactobacillus phage c5	31841	42.018	Lactobacillus	Group I	Cequinquevirus	Cequinquevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus delbrueckii subsp. bulgaricus	High-quality	High-quality	99.580	AAI-based (high-confidence)	Cequinquevirus	Cequinquevirus c5	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_38
EU350361	Abalone shriveling syndrome-associated virus	34952	39.520	Unspecified	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Haliotis diversicolor aquatilis	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
EU399241	Halomonas phage phiHAP-1	39245	58.978	Halomonas	Group I	Hapunavirus	Hapunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Hapunavirus	Hapunavirus HAP1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	parA orf_38;integrase orf_39;antirepressor orf_43
EU408779	Bacillus phage AP50	14398	38.651	Bacillus	Group I	Betatectivirus	Betatectivirus	Unclassified	Tectiviridae	Kalamavirales	Tectiliviricetes	Preplasmiviricota	Bamfordvirae	Varidnaviria	Bacillus anthracis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Betatectivirus	Betatectivirus AP50	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic