INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EU078592 | Escherichia phage DE3 | 42925 | 51.884 | Escherichia | Group I | Lambdavirus | Lambdavirus | Jacobvirinae | Zimmerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli BL21(DE3) | Medium-quality | Genome-fragment | 87.750 | AAI-based (high-confidence) | Lambdavirus | Lambdavirus DE3 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_18;antirepressor orf_19 |
| EU081845 | Lactococcus phage 1706 | 55597 | 33.689 | Lactococcus | Group I | Fremauxvirus | Fremauxvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis SMQ-450 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fremauxvirus | Fremauxvirus fv1706 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| EU100883 | Thermus phage P23-45 | 84201 | 57.762 | Thermus | Group I | Oshimavirus | Oshimavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Thermus thermophilus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Oshimavirus | Oshimavirus P2345 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_5 |
| EU100884 | Thermus phage P74-26 | 83319 | 57.759 | Thermus | Group I | Oshimavirus | Oshimavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Thermus thermophilus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Oshimavirus | Oshimavirus P7426 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_5 |
| EU124666 | Thalassomonas phage BA3 | 37313 | 40.889 | Thalassomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Thalassomonas loyana LMG 22536 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| EU136189 | Staphylococcus phage SAP-2 | 17938 | 28.944 | Staphylococcus | Group I | Rosenblumvirus | Rosenblumvirus | Rakietenvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Rosenblumvirus | Rosenblumvirus SAP2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| EU197055 | Pseudomonas phage 201phi2-1 | 316674 | 45.344 | Pseudomonas | Group I | Serwervirus | Serwervirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Serwervirus | Serwervirus 201phi21 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| EU203571 | Mycobacterium phage Giles | 53746 | 67.447 | Mycobacterium | Group I | Gilesvirus | Gilesvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.970 | AAI-based (high-confidence) | Gilesvirus | Gilesvirus giles | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_29 |
| EU221285 | Lactococcus phage bIBB29 | 29305 | 34.724 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 96.540 | AAI-based (high-confidence) | Skunavirus | Skunavirus bibb29 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| EU236438 | Pseudomonas phage PT2 | 42961 | 62.182 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.740 | AAI-based (high-confidence) | Phikmvvirus | Phikmvvirus phiKMV | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |