INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| DQ904452 | Escherichia phage RB32 | 165890 | 35.340 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.620 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus RB32 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| DQ908929 | Staphylococcus phage 80 | 42140 | 35.565 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.080 | AAI-based (high-confidence) | Phietavirus | Phietavirus pv80 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_6;antirepressor orf_7;integrase orf_31 |
| DQ997624 | Thermus phage phiYS40 | 152372 | 32.586 | Thermus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.100 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| EF056009 | Escherichia phage N4 | 70153 | 41.304 | Escherichia | Group I | Enquatrovirus | Enquatrovirus | Enquatrovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K-12 | High-quality | High-quality | 96.850 | AAI-based (high-confidence) | Enquatrovirus | Enquatrovirus N4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| EF057797 | Vibrio phage VP882 | 38197 | 56.952 | Vibrio | Group I | Hapunavirus | Hapunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus O3:K6 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Hapunavirus | Hapunavirus VP882 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | parA orf_41 |
| EF068134 | Qubevirus faecium | 4184 | 51.243 | Unspecified | Group IV | Qubevirus | Qubevirus | Unclassified | Fiersviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Unspecified | High-quality | High-quality | 98.730 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| EF071488 | Pyrococcus abyssi virus 1 | 18098 | 47.160 | Pyrococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pyrococcus abyssi GE23 | Not-determined | Genome-fragment | New_genus | New_species | No hits were found with the default settings | lytic | |||
| EF108464 | Emesvirus zinderi | 3569 | 51.919 | Unspecified | Group IV | Emesvirus | Emesvirus | Unclassified | Fiersviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| EF108465 | Escherichia phage MS2 | 3569 | 51.583 | Escherichia | Group IV | Emesvirus | Emesvirus | Unclassified | Fiersviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| EF116926 | Streptococcus phage SMP | 36019 | 41.581 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus suis capsular serotype 2 | High-quality | High-quality | 97.200 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_9 |