INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| DQ785801 | Sodalis phage phiSG1 | 52162 | 50.826 | Sodalis | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sodalis glossinidius | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_33;parA orf_53;integrase orf_64 |
| DQ831957 | Staphylococcus phage CNPH82 | 43420 | 34.675 | Staphylococcus | Group I | Rockefellervirus | Rockefellervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | HER 414 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Rockefellervirus | Rockefellervirus CNPH82 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_33;antirepressor orf_39 |
| DQ832317 | Escherichia phage V5 | 137947 | 43.561 | Escherichia | Group I | Vequintavirus | Vequintavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157 | High-quality | High-quality | 98.330 | AAI-based (high-confidence) | Vequintavirus | Vequintavirus V5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| DQ834250 | Staphylococcus phage PH15 | 44041 | 34.908 | Staphylococcus | Group I | Rockefellervirus | Rockefellervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | HER 414 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Rockefellervirus | Rockefellervirus PH15 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_34;cro orf_38;antirepressor orf_42 |
| DQ836063 | Pseudomonas phage PRR1 | 3573 | 49.202 | Pseudomonas | Group IV | Perrunavirus | Perrunavirus | Unclassified | Fiersviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| DQ838728 | Lactococcus phage P335 | 33613 | 35.486 | Lactococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis F7/2 | High-quality | High-quality | 91.670 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | cro orf_1 |
| DQ840344 | Bacillus phage 1 | 35055 | 44.850 | Bacillus | Group I | Svunavirus | Svunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus sp. 6k512 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Svunavirus | Svunavirus sv1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_41;antirepressor orf_46 |
| DQ864624 | Streptococcus phage P9 | 40539 | 39.651 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1 |
| DQ873690 | Pseudomonas phage MP22 | 36409 | 64.190 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruignosa PA14 | High-quality | High-quality | 95.590 | AAI-based (high-confidence) | Casadabanvirus | Casadabanvirus MP22 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_1;integrase orf_5 |
| DQ875742 | Phormidium phage Pf-WMP4 | 40938 | 51.803 | Phormidium | Group I | Wumpquatrovirus | Wumpquatrovirus | Unclassified | Saffermanviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Wumpquatrovirus | Wumpquatrovirus WMP4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |