INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| DQ163916 | Pseudomonas phage M6 | 59446 | 64.464 | Pseudomonas | Group I | Yuavirus | Yuavirus | Rabinowitzvirinae | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 96.830 | AAI-based (high-confidence) | Yuavirus | Yuavirus M6 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| DQ163917 | Pseudomonas phage F8 | 66015 | 54.944 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.950 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus F8 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| DQ203855 | Burkholderia phage Bcep176 | 44856 | 61.539 | Burkholderia | Group I | Stanholtvirus | Stanholtvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| DQ222851 | Bacillus phage Cherry | 36615 | 35.264 | Bacillus | Group I | Wbetavirus | Wbetavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus anthracis Vollum | High-quality | High-quality | 92.550 | AAI-based (high-confidence) | Wbetavirus | Wbetavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_26;antirepressor orf_28 |
| DQ222853 | Bacillus phage Gamma | 37253 | 35.221 | Bacillus | Group I | Wbetavirus | Wbetavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus ATCC 4342 | High-quality | High-quality | 94.160 | AAI-based (high-confidence) | Wbetavirus | Wbetavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_26;antirepressor orf_30 |
| DQ222855 | Wbetavirus gamma53 | 38067 | 35.632 | Unspecified | Group I | Wbetavirus | Wbetavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus anthracis Vollum | High-quality | High-quality | 96.190 | AAI-based (high-confidence) | Wbetavirus | Wbetavirus gamma53 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_26;antirepressor orf_28 |
| DQ227763 | Lactococcus phage 712 | 30510 | 33.884 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Skunavirus | Skunavirus sv712 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| DQ227764 | Lactococcus virus jj50 | 27453 | 34.943 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 90.540 | AAI-based (high-confidence) | Skunavirus | Skunavirus sk1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| DQ289555 | Bacillus phage WBeta | 40867 | 35.258 | Bacillus | Group I | Wbetavirus | Wbetavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus ATCC 4342 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Wbetavirus | Wbetavirus wbeta | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_26;antirepressor orf_33 |
| DQ289556 | Bacillus phage Gamma isolate d'Herelle | 37373 | 35.130 | Bacillus | Group I | Wbetavirus | Wbetavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus ATCC 4342 | High-quality | High-quality | 94.440 | AAI-based (high-confidence) | Wbetavirus | Wbetavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_26;antirepressor orf_30 |