Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
DQ114220Pasteurella phage F1083050542.105PasteurellaGroup I IrtavirusIrtavirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pasteurella multocidaHigh-qualityHigh-quality100.000AAI-based (high-confidence) IrtavirusIrtavirus F108Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1
DQ121662Escherichia phage Jk064607244.001EscherichiaGroup I RogunavirusRogunavirusRogunavirinaeDrexlerviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality98.020AAI-based (high-confidence) RogunavirusRogunavirus Jk06Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
DQ123818Actinomyces phage Av-11717149.502ActinomycesGroup I DybvigvirusDybvigvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Actinomyces naeslundiiCompleteHigh-quality100.000ITR (medium-confidence) DybvigvirusDybvigvirus Av1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
DQ126339Escherichia phage phiV103910448.972EscherichiaGroup I UetakevirusUetakevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli O157:H7High-qualityHigh-quality97.320AAI-based (high-confidence) UetakevirusUetakevirus phiV10The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_29
DQ149023Synechococcus phage syn917730040.634SynechococcusGroup I OrmenosvirusOrmenosvirusUnclassifiedKyanoviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality100.000AAI-based (high-confidence) OrmenosvirusOrmenosvirus syn9Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
DQ150593Bacillus phage Fah3797434.945BacillusGroup I WbetavirusWbetavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus anthracisHigh-qualityHigh-quality95.910AAI-based (high-confidence) WbetavirusWbetavirus fahCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_26;antirepressor orf_33
DQ163912Pseudomonas phage F103919962.083PseudomonasGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality97.140AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_27
DQ163913Pseudomonas phage 734299953.559PseudomonasGroup I SeptimatrevirusSeptimatrevirusJondennisvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality100.000AAI-based (high-confidence) SeptimatrevirusSeptimatrevirus sv73Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
DQ163914Pseudomonas phage 119X4336544.893PseudomonasGroup I JamesmcgillvirusJamesmcgillvirusUnclassifiedFredfastierviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality99.050AAI-based (high-confidence) JamesmcgillvirusJamesmcgillvirus jv119XCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
DQ163915Pseudomonas phage PA114963944.783PseudomonasGroup I PaundecimvirusPaundecimvirusUnclassifiedZobellviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality99.020AAI-based (high-confidence) PaundecimvirusPaundecimvirus PA11Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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