INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MG775258 | Pseudomonas phage Henninger | 40923 | 57.586 | Pseudomonas | Group I | Hennigervirus | Hennigervirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas sp. CTX2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Hennigervirus | Hennigervirus henninger | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MG775259 | Pseudomonas phage Bjorn | 45936 | 53.076 | Pseudomonas | Group I | Bjornvirus | Bjornvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas sp. CT12 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Bjornvirus | Bjornvirus bjorn | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG775260 | Pseudomonas phage Littlefix | 74895 | 48.734 | Pseudomonas | Group I | Littlefixvirus | Littlefixvirus | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas sp. CT12 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Littlefixvirus | Littlefixvirus littlefix | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG775261 | Pseudomonas phage PollyC | 41651 | 57.595 | Pseudomonas | Group I | Pollyceevirus | Pollyceevirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas sp. CT12 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pollyceevirus | Pollyceevirus pollyC | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MG779474 | Lactococcus phage MP1 | 32575 | 35.008 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis subsp. lactis biovar diacetylactis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Skunavirus | Skunavirus MP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG781190 | Escherichia phage vB_EcoM-fFiEco06 | 167076 | 35.340 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 99.330 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus ecombl75 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG781191 | Escherichia phage vB_EcoM-fHoEco02 | 167064 | 35.335 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 99.320 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus ecombl75 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG784342 | Bacillus phage Carmen17 | 41820 | 42.037 | Bacillus | Group I | Carmenvirus | Carmenvirus | Gutmannvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Carmenvirus | Carmenvirus carmen17 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MG788324 | Lactobacillus phage PM411 | 69649 | 42.311 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus plantarum PM411 | Medium-quality | Genome-fragment | 89.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_9 |
| MG793454 | Mycobacterium phage SWU2 | 50013 | 62.666 | Mycobacterium | Group I | Timshelvirus | Timshelvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.240 | AAI-based (high-confidence) | Timshelvirus | Timshelvirus SWU2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32 |