INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MG770212	Mycobacterium phage Haimas	68296	66.513	Mycobacterium	Group I	Pegunavirus	Pegunavirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.300	AAI-based (high-confidence)	Pegunavirus	Pegunavirus soto	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG770213	Mycobacterium phage OldBen	57159	61.485	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.230	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus oldben	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_40;immunity orf_42
MG770214	Gordonia phage SteveFrench	75687	59.182	Gordonia	Group I	Montyvirus	Montyvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	Complete	High-quality	100.000	DTR (high-confidence)	Montyvirus	Montyvirus stevefrench	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG770215	Gordonia phage Troje	45909	60.378	Gordonia	Group I	Emalynvirus	Emalynvirus	Ceeteevirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrea 3612	High-quality	High-quality	99.440	AAI-based (high-confidence)	Emalynvirus	Emalynvirus troje	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG770216	Mycobacterium phage Rem711	50832	66.214	Mycobacterium	Group I	Trigintaduovirus	Trigintaduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Trigintaduovirus	Trigintaduovirus rem711	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_45
MG770228	Escherichia phage PMBT57	70857	41.371	Escherichia	Group I	Enquatrovirus	Enquatrovirus	Enquatrovirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O111:H-	High-quality	High-quality	97.680	AAI-based (high-confidence)	Enquatrovirus	Enquatrovirus N4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_45
MG770379	Klebsiella phage vB_KpnM_KpS110	156801	46.143	Klebsiella	Group I	Taipeivirus	Taipeivirus	Unclassified	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	99.230	AAI-based (high-confidence)	Taipeivirus	Taipeivirus KpS110	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MG770897	Staphylococcus phage SH-St 15644	45111	33.349	Staphylococcus	Group I	Triavirus	Triavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus 644	High-quality	High-quality	97.100	AAI-based (high-confidence)	Triavirus	Triavirus tv15644	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_25;cro orf_31;integrase orf_57
MG775042	Citrobacter phage vB_CroP_CrRp3	44349	45.155	Citrobacter	Group I	Rodentiumvirus	Rodentiumvirus	Molineuxvirinae	Autosignataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Citrobacter rodentium ICC180	High-quality	High-quality	99.450	AAI-based (high-confidence)	Rodentiumvirus	Rodentiumvirus CrRp3	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MG775043	Citrobacter phage vB_CroM_CrRp10	168403	35.508	Citrobacter	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Citrobacter rodentium ICC180	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus cromcrrp10	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic