INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| DQ003641 | Listeria phage P35 | 35822 | 40.818 | Listeria | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| DQ003642 | Listeria phage A006 | 38124 | 35.497 | Listeria | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_29;antirepressor orf_37 |
| DQ004855 | Listeria phage P100 | 131384 | 36.039 | Listeria | Group I | Pecentumvirus | Pecentumvirus | Jasinskavirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes | High-quality | High-quality | 95.180 | AAI-based (high-confidence) | Pecentumvirus | Pecentumvirus P100 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| DQ029335 | Vibrio phage VP4 | 39503 | 42.612 | Vibrio | Group I | Chatterjeevirus | Chatterjeevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Chatterjeevirus | Chatterjeevirus VP4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| DQ054536 | Lactococcus phage P008 | 28538 | 34.680 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 94.060 | AAI-based (high-confidence) | Skunavirus | Skunavirus P008 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| DQ079869 | Escherichia phage ID2 Moscow/ID/2001 | 5486 | 45.753 | Escherichia | Group II | Gequatrovirus | Gequatrovirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 95.490 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| DQ079870 | Escherichia phage ID21 | 6068 | 45.270 | Escherichia | Group II | Alphatrevirus | Alphatrevirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 99.650 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| DQ079871 | Escherichia phage ID32 | 6071 | 45.034 | Escherichia | Group II | Alphatrevirus | Alphatrevirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 99.700 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| DQ079872 | Escherichia phage NC35 | 6039 | 44.726 | Escherichia | Group II | Alphatrevirus | Alphatrevirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 99.740 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| DQ079873 | Enterobacteria phage WA13 | 6068 | 44.825 | Enterobacteria | Group II | Alphatrevirus | Alphatrevirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 99.660 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown |