INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CP124955 | Enterococcus phage 1_EF62phi | 30478 | 32.669 | Enterococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis EfsC23 | High-quality | High-quality | 99.910 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| CP124959 | Enterococcus phage_EF62phi | 28901 | 32.504 | Enterococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis EfsC13 | High-quality | High-quality | 94.740 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| CP124962 | Enterococcus phage 1_EfsC1_EF62phi | 29866 | 32.442 | Enterococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis EfsC1 | High-quality | High-quality | 97.910 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| CU468217 | Azospirillum phage Cd | 62337 | 63.932 | Azospirillum | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Azospirillum brasilense Cd | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_87 |
| D00624 | Chlamydiaunovirus Chp1 | 4877 | 36.498 | Unspecified | Group II | Chlamydiaunovirus | Chlamydiaunovirus | Unclassified | Betagokushoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | |||||||||
| D89074 | Fibrovirus fs1 | 6340 | 43.423 | Unspecified | Group II | Fibrovirus | Fibrovirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Unspecified | Medium-quality | Genome-fragment | 89.950 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| DQ003637 | Listeria phage A500 | 38867 | 36.684 | Listeria | Group I | Aquingentivirus | Aquingentivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes | High-quality | High-quality | 96.440 | AAI-based (high-confidence) | Aquingentivirus | Aquingentivirus A500 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_31;cro orf_34;antirepressor orf_37 |
| DQ003638 | Listeria phage A511 | 137619 | 35.929 | Listeria | Group I | Pecentumvirus | Pecentumvirus | Jasinskavirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes | Complete | High-quality | 100.000 | DTR (high-confidence) | Pecentumvirus | Pecentumvirus A511 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| DQ003639 | Listeria phage B025 | 42653 | 35.100 | Listeria | Group I | Jelitavirus | Jelitavirus | Trabyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Jelitavirus | Jelitavirus B025 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_33;cro orf_36 |
| DQ003640 | Listeria phage B054 | 48172 | 36.212 | Listeria | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes | High-quality | High-quality | 99.900 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_37;antirepressor orf_71 |