INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY385383 | Mycobacterium phage Maskar | 69082 | 66.343 | Mycobacterium | Group I | Pegunavirus | Pegunavirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.430 | AAI-based (high-confidence) | Pegunavirus | Pegunavirus oline | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY385384 | Mycobacterium phage SimranZ1 | 56335 | 61.260 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.780 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_42;immunity orf_44;antirepressor orf_45 |
| KY385423 | Klebsiella phage vB_KpnP_KpV74 | 44094 | 54.141 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Drulisvirus | Drulisvirus KpV74 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY389063 | Staphylococcus phage phi575 | 42160 | 31.848 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus sciuri P575 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;cro orf_4;antirepressor orf_6 |
| KY389064 | Staphylococcus phage phi879 | 41448 | 32.014 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus sciuri P879 | High-quality | High-quality | 99.290 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;cro orf_4;antirepressor orf_6 |
| KY389315 | Klebsiella phage K5-2 | 41116 | 53.342 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae subsp. ozaenae K5 | Complete | High-quality | 100.000 | DTR (high-confidence) | Przondovirus | Przondovirus K52 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY389316 | Klebsiella phage K5-4 | 40163 | 53.136 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae NTUH-K44 | Complete | High-quality | 100.000 | DTR (high-confidence) | Przondovirus | Przondovirus K54 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY398841 | Escherichia phage vB_EcoS_CEB_EC3a | 44234 | 44.217 | Escherichia | Group I | Loudonvirus | Loudonvirus | Braunvirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli clinical isolate 3 | High-quality | High-quality | 96.640 | AAI-based (high-confidence) | Loudonvirus | Loudonvirus EC3a | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KY417925 | Ochrobactrum phage POI1126 | 59782 | 56.243 | Ochrobactrum | Group I | Namazuvirus | Namazuvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ochrobactrum intermedium | High-quality | High-quality | 99.760 | AAI-based (high-confidence) | Namazuvirus | Namazuvirus POI1126 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_59 |
| KY420199 | Proteus phage vB_PvuS_Pm34 | 39558 | 41.008 | Proteus | Group I | Hendrixvirinae | Unclassified | Hendrixvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Proteus vulgaris | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | cro orf_22;integrase orf_44 |