INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KX657796	Mycobacterium phage Urkel	60526	66.224	Mycobacterium	Group I	Anayavirus	Anayavirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.890	AAI-based (high-confidence)	Anayavirus	Anayavirus urkel	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_41;immunity orf_43
KX660669	Aquamicrobium phage P14	40551	57.833	Aquamicrobium	Group I	Aqualcavirus	Aqualcavirus	Unclassified	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Aquamicrobium sp. H14	High-quality	High-quality	100.000	AAI-based (high-confidence)	Aqualcavirus	Aqualcavirus P14	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX664447	Mycobacterium phage Phaeder	53300	62.619	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fromanvirus	Fromanvirus packman	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	parA orf_32;immunity orf_70
KX664448	Mycobacterium phage Watson	50841	64.045	Mycobacterium	Group I	Microwolfvirus	Microwolfvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Microwolfvirus	Microwolfvirus microwolf	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32;immunity orf_69
KX664455	Mycobacterium phage Zombie	41901	66.566	Mycobacterium	Group I	Liefievirus	Liefievirus	Gclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.370	AAI-based (high-confidence)	Liefievirus	Liefievirus halo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32;immunity orf_33
KX664695	Escherichia phage ESCO5	149268	38.972	Escherichia	Group I	Phapecoctavirus	Phapecoctavirus	Stephanstirmvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli BEN 5202	High-quality	High-quality	98.520	AAI-based (high-confidence)	Phapecoctavirus	Phapecoctavirus ESCO5	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX669227	Escherichia phage ZG49	40291	49.815	Escherichia	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli 49	Complete	High-quality	100.000	DTR (high-confidence)	Kayfunavirus	Kayfunavirus ZG49	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KX669657	Morganella phage PMM09555B	51065	45.906	Morganella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Morganella morganii	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_22;cro orf_40
KX669658	Ochrobactrum phage POA1180	41655	56.615	Ochrobactrum	Group I	Abaiavirus	Abaiavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Ochrobactrum anthropi	High-quality	High-quality	100.000	AAI-based (high-confidence)	Abaiavirus	Abaiavirus POA1180	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX670786	Arthrobacter phage Chubster	70258	61.731	Arthrobacter	Group I	Klausavirus	Klausavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Klausavirus	Klausavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic