INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KX641264 | Mycobacterium phage LindNT | 60053 | 66.784 | Mycobacterium | Group I | Anayavirus | Anayavirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.140 | AAI-based (high-confidence) | Anayavirus | Anayavirus prithvi | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_40;immunity orf_42 |
| KX641265 | Mycobacterium phage Taheera | 41077 | 66.434 | Mycobacterium | Group I | Liefievirus | Liefievirus | Gclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 94.280 | AAI-based (high-confidence) | Liefievirus | Liefievirus taheera | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32;immunity orf_33 |
| KX641266 | Mycobacterium phage Terror | 41077 | 66.431 | Mycobacterium | Group I | Liefievirus | Liefievirus | Gclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 94.280 | AAI-based (high-confidence) | Liefievirus | Liefievirus taheera | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32;immunity orf_33 |
| KX648373 | Mycobacterium phage Cocoaberry | 51376 | 63.983 | Mycobacterium | Group I | Backyardiganvirus | Backyardiganvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Backyardiganvirus | Backyardiganvirus peaches | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;immunity orf_63 |
| KX648391 | Mycobacterium phage Tortellini | 49658 | 65.818 | Mycobacterium | Group I | Tortellinivirus | Tortellinivirus | Pclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.500 | AAI-based (high-confidence) | Tortellinivirus | Tortellinivirus tortellini | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32;immunity orf_37;cro orf_38;antirepressor orf_40 |
| KX649889 | Salmonella phage SE-W109 | 42147 | 49.600 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Enteritidis | High-quality | High-quality | 98.180 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus SEW109 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KX656785 | Leptospira phage Lin_34 | 87308 | 39.376 | Leptospira | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leptospira inadai M34/99 serogroup Lyme | High-quality | High-quality | 98.700 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | parA orf_15;integrase orf_18 |
| KX657793 | Mycobacterium phage DarthPhader | 53432 | 63.159 | Mycobacterium | Group I | Refugevirus | Refugevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Refugevirus | Refugevirus darthphader | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_32;immunity orf_66 |
| KX657794 | Mycobacterium phage SamuelLPlaqson | 60526 | 66.224 | Mycobacterium | Group I | Anayavirus | Anayavirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.890 | AAI-based (high-confidence) | Anayavirus | Anayavirus urkel | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_41;immunity orf_43 |
| KX657795 | Mycobacterium phage DrHayes | 60526 | 66.226 | Mycobacterium | Group I | Anayavirus | Anayavirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.890 | AAI-based (high-confidence) | Anayavirus | Anayavirus urkel | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_41;immunity orf_43 |