Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KU963260Gordonia phage Emalyn4398261.214GordoniaGroup I EmalynvirusEmalynvirusCeeteevirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae 3612High-qualityHigh-quality95.270AAI-based (high-confidence) EmalynvirusEmalynvirus emalynCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KU963261Gordonia phage BetterKatz5063667.114GordoniaGroup I BetterkatzvirusBetterkatzvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae 3612High-qualityHigh-quality99.880AAI-based (high-confidence) BetterkatzvirusBetterkatzvirus betterkatzCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_36;immunity orf_37
KU963262Gordonia phage Benczkowski147538059.463GordoniaGroup I DemosthenesvirusDemosthenesvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae 3612CompleteHigh-quality100.000DTR (high-confidence) DemosthenesvirusDemosthenesvirus katyushaCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KU963263Gordonia phage BaxterFox5371766.543GordoniaGroup I BaxterfoxvirusBaxterfoxvirusNymbaxtervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae 3612High-qualityHigh-quality100.000AAI-based (high-confidence) BaxterfoxvirusBaxterfoxvirus baxterfoxThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_37;integrase orf_41;immunity orf_42;antirepressor orf_46
KU977419Stx1 converting phage AU5Stx15837149.775UnspecifiedGroup I TraversvirusTraversvirusSepvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedMedium-qualityGenome-fragment88.960AAI-based (high-confidence) TraversvirusTraversvirus AU5Stx1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;antirepressor orf_9;cro orf_25;cro orf_26;antirepressor orf_36;antirepressor orf_50
KU977420Stx1 converting phage AU6Stx15712348.732UnspecifiedGroup I TraversvirusTraversvirusSepvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedMedium-qualityGenome-fragment87.140AAI-based (high-confidence) TraversvirusTraversvirus AU6Stx1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;cro orf_21;cro orf_22;antirepressor orf_46
KU981050Weissella phage WCP303369741.229WeissellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Weissella sp.High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
KU984914Mycobacterium phage Malinsilva5083964.026MycobacteriumGroup I MicrowolfvirusMicrowolfvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) MicrowolfvirusMicrowolfvirus microwolfCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_32;immunity orf_69
KU984979Propionibacterium phage PFR13807164.842PropionibacteriumGroup I PulverervirusPulverervirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Propionibacterium freudenreichiiHigh-qualityHigh-quality96.040AAI-based (high-confidence) PulverervirusPulverervirus PFR1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_26
KU984980Propionibacterium phage PFR23964064.955PropionibacteriumGroup I PulverervirusPulverervirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Propionibacterium freudenreichiiHigh-qualityHigh-quality100.000AAI-based (high-confidence) PulverervirusPulverervirus PFR1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_11;integrase orf_27
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