INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KU963260 | Gordonia phage Emalyn | 43982 | 61.214 | Gordonia | Group I | Emalynvirus | Emalynvirus | Ceeteevirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 95.270 | AAI-based (high-confidence) | Emalynvirus | Emalynvirus emalyn | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU963261 | Gordonia phage BetterKatz | 50636 | 67.114 | Gordonia | Group I | Betterkatzvirus | Betterkatzvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.880 | AAI-based (high-confidence) | Betterkatzvirus | Betterkatzvirus betterkatz | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_36;immunity orf_37 |
| KU963262 | Gordonia phage Benczkowski14 | 75380 | 59.463 | Gordonia | Group I | Demosthenesvirus | Demosthenesvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | Complete | High-quality | 100.000 | DTR (high-confidence) | Demosthenesvirus | Demosthenesvirus katyusha | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU963263 | Gordonia phage BaxterFox | 53717 | 66.543 | Gordonia | Group I | Baxterfoxvirus | Baxterfoxvirus | Nymbaxtervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Baxterfoxvirus | Baxterfoxvirus baxterfox | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_37;integrase orf_41;immunity orf_42;antirepressor orf_46 |
| KU977419 | Stx1 converting phage AU5Stx1 | 58371 | 49.775 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Medium-quality | Genome-fragment | 88.960 | AAI-based (high-confidence) | Traversvirus | Traversvirus AU5Stx1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;antirepressor orf_9;cro orf_25;cro orf_26;antirepressor orf_36;antirepressor orf_50 |
| KU977420 | Stx1 converting phage AU6Stx1 | 57123 | 48.732 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Medium-quality | Genome-fragment | 87.140 | AAI-based (high-confidence) | Traversvirus | Traversvirus AU6Stx1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_21;cro orf_22;antirepressor orf_46 |
| KU981050 | Weissella phage WCP30 | 33697 | 41.229 | Weissella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Weissella sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KU984914 | Mycobacterium phage Malinsilva | 50839 | 64.026 | Mycobacterium | Group I | Microwolfvirus | Microwolfvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Microwolfvirus | Microwolfvirus microwolf | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32;immunity orf_69 |
| KU984979 | Propionibacterium phage PFR1 | 38071 | 64.842 | Propionibacterium | Group I | Pulverervirus | Pulverervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Propionibacterium freudenreichii | High-quality | High-quality | 96.040 | AAI-based (high-confidence) | Pulverervirus | Pulverervirus PFR1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_26 |
| KU984980 | Propionibacterium phage PFR2 | 39640 | 64.955 | Propionibacterium | Group I | Pulverervirus | Pulverervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Propionibacterium freudenreichii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pulverervirus | Pulverervirus PFR1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_11;integrase orf_27 |