INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KU946962	Proteus phage PM 116	44601	39.217	Proteus	Group I	Acadevirus	Acadevirus	Molineuxvirinae	Autosignataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Proteus mirabilis CEMTC 1726	High-quality	High-quality	100.000	AAI-based (high-confidence)	Acadevirus	Acadevirus PM116	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU948710	Pseudomonas phage PEV2	72697	54.863	Pseudomonas	Group I	Litunavirus	Litunavirus	Migulavirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa Kutter	Complete	High-quality	100.000	DTR (high-confidence)	Litunavirus	Litunavirus Ab09	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU951146	Salmonella phage f2SE	41865	49.796	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serovar Enteritidis	High-quality	High-quality	97.570	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus f18SE	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU951147	Salmonella phage f3SE	41867	49.798	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serovar Enteritidis	High-quality	High-quality	97.630	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus f18SE	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU958700	Streptomyces phage Chymera	34742	71.369	Streptomyces	Group I	Chymeravirus	Chymeravirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces venezuelae ATCC 10712	High-quality	High-quality	100.000	AAI-based (high-confidence)	Chymeravirus	Chymeravirus chymera	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32;immunity orf_33
KU963245	Gordonia phage Hotorobo	76972	58.859	Gordonia	Group I	Montyvirus	Montyvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	Complete	High-quality	100.000	DTR (high-confidence)	Montyvirus	Montyvirus monty	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU963246	Gordonia phage SoilAssassin	47880	66.819	Gordonia	Group I	Attisvirus	Attisvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Attisvirus	Attisvirus attis	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_34;immunity orf_39;antirepressor orf_43
KU963247	Gordonia phage Attis	47881	66.820	Gordonia	Group I	Attisvirus	Attisvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Attisvirus	Attisvirus attis	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_34;immunity orf_39;antirepressor orf_43
KU963248	Gordonia phage Yvonnetastic	98136	59.749	Gordonia	Group I	Yvonnevirus	Yvonnevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Yvonnevirus	Yvonnevirus yvonnetastic	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_86
KU963249	Gordonia phage Yeezy	51884	66.695	Gordonia	Group I	Baxterfoxvirus	Baxterfoxvirus	Nymbaxtervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	99.010	AAI-based (high-confidence)	Baxterfoxvirus	Baxterfoxvirus yeezy	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_34