INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KU568494	Mycobacterium phage Bactobuster	52129	63.074	Mycobacterium	Group I	Pukovnikvirus	Pukovnikvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.760	AAI-based (high-confidence)	Pukovnikvirus	Pukovnikvirus bactobuster	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_33;immunity orf_66
KU574722	Pectobacterium phage vB_PcaM_CBB	378379	35.919	Pectobacterium	Group I	Mimasvirus	Mimasvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pectobacterium carotovorum subsp. carotovorum strain CBBL19-1-37	Complete	High-quality	100.000	DTR (high-confidence)	Mimasvirus	Mimasvirus CBB	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KU577463	Bacillus phage Deep Blue	157501	39.947	Bacillus	Group I	Caeruleovirus	Caeruleovirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus cereus BtB2-4	High-quality	High-quality	98.670	AAI-based (high-confidence)	Caeruleovirus	Caeruleovirus deepblue	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU578077	Mycobacterium phage Marie	50877	64.001	Mycobacterium	Group I	Microwolfvirus	Microwolfvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Microwolfvirus	Microwolfvirus JHC117	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32;immunity orf_69
KU594605	Cyanophage S-RIM50	174307	40.281	Synechococcus	Group I	Neptunevirus	Neptunevirus	Unclassified	Kyanoviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Synechococcus sp.	High-quality	High-quality	99.940	AAI-based (high-confidence)	Neptunevirus	Neptunevirus srim50	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU594606	Cyanophage S-RIM32	194437	39.868	Synechococcus	Group I	Bristolvirus	Bristolvirus	Unclassified	Kyanoviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Synechococcus sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Bristolvirus	Bristolvirus rhodeisland	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KU594607	Cyanophage S-RIM44	192999	40.625	Synechococcus	Group I	Vellamovirus	Vellamovirus	Unclassified	Kyanoviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Synechococcus sp.	High-quality	High-quality	99.480	AAI-based (high-confidence)	Vellamovirus	Vellamovirus syn1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KU595432	Xanthomonas phage f20-Xaj	43851	59.830	Xanthomonas	Group I	Pradovirus	Pradovirus	Gujervirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas arboricola pv. juglandis X-J303	High-quality	High-quality	98.620	AAI-based (high-confidence)	Pradovirus	Pradovirus f20	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU595433	Xanthomonas phage f30-Xaj	44262	59.882	Xanthomonas	Group I	Pradovirus	Pradovirus	Gujervirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas arboricola pv. juglandis X-J303	High-quality	High-quality	99.550	AAI-based (high-confidence)	Pradovirus	Pradovirus f30	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU598975	Staphylococcus phage CNPx	43293	34.661	Staphylococcus	Group I	Rockefellervirus	Rockefellervirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus epidermidis LM1680	High-quality	High-quality	100.000	AAI-based (high-confidence)	Rockefellervirus	Rockefellervirus CNPx	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_32;cro orf_36;antirepressor orf_40