INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KU356690 | Pseudomonas phage ZC03 | 69844 | 42.601 | Pseudomonas | Group I | Zicotriavirus | Zicotriavirus | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 98.690 | AAI-based (high-confidence) | Zicotriavirus | Zicotriavirus ZC03 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU356691 | Pseudomonas phage ZC08 | 70774 | 43.074 | Pseudomonas | Group I | Zicotriavirus | Zicotriavirus | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Zicotriavirus | Zicotriavirus ZC08 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU497559 | Pseudomonas phage K5 | 93754 | 49.353 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAK | Complete | High-quality | 100.000 | DTR (high-confidence) | Pakpunavirus | Pakpunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU504502 | Vibrio phage 919TP | 33133 | 48.921 | Vibrio | Group I | Longwoodvirus | Longwoodvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae O1 El Tor strain 919T | High-quality | High-quality | 97.040 | AAI-based (high-confidence) | Longwoodvirus | Longwoodvirus K139 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1 |
| KU510289 | Acinetobacter phage LZ35 | 44885 | 37.948 | Acinetobacter | Group I | Obolenskvirus | Obolenskvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | High-quality | High-quality | 99.900 | AAI-based (high-confidence) | Obolenskvirus | Obolenskvirus LZ35 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KU517658 | Clostridium phage HM T | 38039 | 29.025 | Clostridium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium saccharoperbutylacetonicum N1-4 (HMT) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;integrase orf_22 |
| KU521356 | Pseudomonas phage KTN4 | 279593 | 36.893 | Pseudomonas | Group I | Phikzvirus | Phikzvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 99.740 | AAI-based (high-confidence) | Phikzvirus | Phikzvirus phiKZ | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU522583 | Enterobacteria phage ECGD1 | 146647 | 37.473 | Enterobacteria | Group I | Justusliebigvirus | Justusliebigvirus | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.030 | AAI-based (high-confidence) | Justusliebigvirus | Justusliebigvirus PHB05 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU530220 | Streptomyces phage Xkcd426 | 64477 | 68.828 | Streptomyces | Group I | Woodruffvirus | Woodruffvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces griseus subsp. griseus ATCC 10137 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KU535860 | Pseudomonas phage O4 | 50509 | 44.568 | Pseudomonas | Group I | Paundecimvirus | Paundecimvirus | Unclassified | Zobellviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Paundecimvirus | Paundecimvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |