INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KU204984	Pseudomonas phage AAT-1	57599	65.894	Pseudomonas	Group I	Pamexvirus	Pamexvirus	Bradleyvirinae	Mesyanzhinovviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PA14	High-quality	High-quality	93.780	AAI-based (high-confidence)	Pamexvirus	Pamexvirus AAT1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_2
KU230356	Nodularia phage vB_NpeS-2AV2	139100	40.278	Nodularia	Group I	Ravarandavirus	Ravarandavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Nodularia sp. AV2	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ravarandavirus	Ravarandavirus rv2AV2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_66;cro orf_75
KU234099	Mycobacterium phage MkaliMitinis3	75844	58.881	Mycobacterium	Group I	Faithunavirus	Faithunavirus	Lclasvirinae	Vilmaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Faithunavirus	Faithunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_39;immunity orf_41;cro orf_42
KU234532	Nostoc phage N1	64960	35.445	Nostoc	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Nostoc sp. PCC7210	High-quality	High-quality	97.670	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
KU234533	Nostoc phage A1	68304	36.500	Nostoc	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Nostoc sp. PCC7210	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
KU238067	Stx converting phage vB_EcoS_P27	61580	49.169	Unspecified	Group I	Traversvirus	Traversvirus	Sepvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	93.880	AAI-based (high-confidence)	Traversvirus	Traversvirus P27	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_28;cro orf_29;antirepressor orf_40;antirepressor orf_54;integrase orf_81;antirepressor orf_83
KU238068	Stx converting phage vB_EcoS_P32	62535	49.296	Unspecified	Group I	Traversvirus	Traversvirus	Sepvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	95.500	AAI-based (high-confidence)	Traversvirus	Traversvirus tv933W	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1;cro orf_28;cro orf_29;antirepressor orf_53;antirepressor orf_89
KU238069	Stx converting phage vB_EcoS_P22	62331	49.292	Unspecified	Group I	Traversvirus	Traversvirus	Sepvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	95.180	AAI-based (high-confidence)	Traversvirus	Traversvirus tv933W	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1;cro orf_28;cro orf_29;antirepressor orf_52;antirepressor orf_88
KU238070	Stx converting phage vB_EcoS_ST2-8624	62822	49.607	Unspecified	Group I	Traversvirus	Traversvirus	Sepvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	95.910	AAI-based (high-confidence)	Traversvirus	Traversvirus ST28624	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1;cro orf_29;cro orf_30;antirepressor orf_53;antirepressor orf_87
KU245542	Pseudomonas phage SM1	93191	55.240	Pseudomonas	Group I	Samunavirus	Samunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa USM AR2	Complete	High-quality	100.000	DTR (high-confidence)	Samunavirus	Samunavirus SM1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_33