INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KU189325 | Streptomyces phage Maih | 57256 | 69.256 | Streptomyces | Group I | Woodruffvirus | Woodruffvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces griseus subsp. griseus ATCC 10137 | High-quality | High-quality | 98.260 | AAI-based (high-confidence) | Woodruffvirus | Woodruffvirus TP1604 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU194205 | Escherichia phage JMPW2 | 50298 | 45.376 | Escherichia | Group I | Tunavirus | Tunavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli JM110 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tunavirus | Tunavirus JMPW2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU194206 | Escherichia phage JMPW1 | 49628 | 45.559 | Escherichia | Group I | Tunavirus | Tunavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli JM109 | High-quality | High-quality | 99.090 | AAI-based (high-confidence) | Tunavirus | Tunavirus JMPW1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_58 |
| KU197013 | Xanthomonas phage XAJ24 | 44862 | 58.205 | Xanthomonas | Group I | Pradovirus | Pradovirus | Gujervirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas arboricola pv. juglandis | Complete | High-quality | 100.000 | DTR (high-confidence) | Pradovirus | Pradovirus XAJ24 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU197014 | Xanthomonas phage XAJ2 | 49241 | 47.434 | Xanthomonas | Group I | Xajduovirus | Xajduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas arboricola pv. juglandis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Xajduovirus | Xajduovirus XAJ2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU198331 | Pseudomonas phage NP3 | 66063 | 55.412 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PA14 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus SN | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KU199707 | Pseudomonas phage JBD16C | 36436 | 63.811 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PA14 | High-quality | High-quality | 95.660 | AAI-based (high-confidence) | Casadabanvirus | Casadabanvirus MP22 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_1;integrase orf_5 |
| KU199708 | Pseudomonas phage JBD69 | 36938 | 63.931 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PA14 | High-quality | High-quality | 97.050 | AAI-based (high-confidence) | Casadabanvirus | Casadabanvirus JBD69 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_1 |
| KU199709 | Pseudomonas phage JBD93 | 36629 | 64.293 | Pseudomonas | Group I | Casadabanvirus | Casadabanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PA14 | High-quality | High-quality | 96.210 | AAI-based (high-confidence) | Casadabanvirus | Casadabanvirus FHA0480 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_1 |
| KU199710 | Pseudomonas phage JBD44 | 49033 | 58.493 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PA14 | High-quality | High-quality | 99.920 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_36;integrase orf_44 |