INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KT949345	Aeromonas phage Ahp1	42167	58.864	Aeromonas	Group I	Ahphunavirus	Ahphunavirus	Melnykvirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Aeromonas hydrophila ATCC 7966	High-quality	High-quality	99.910	AAI-based (high-confidence)	Ahphunavirus	Ahphunavirus Ahp1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT959213	Rhodococcus phage TWAMP	46596	58.546	Rhodococcus	Group I	Rerduovirus	Rerduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodococcus erythropolis RIA 643	High-quality	High-quality	99.020	AAI-based (high-confidence)	Rerduovirus	Rerduovirus RER2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_25;immunity orf_53
KT962245	Cellulophaga phage phi4:1_13	145865	32.672	Cellulophaga	Group I	Lightbulbvirus	Lightbulbvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cellulophaga baltica #13	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lightbulbvirus	Lightbulbvirus Cba41	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT962246	Cellulophaga phage phi4:1_18	145865	32.672	Cellulophaga	Group I	Lightbulbvirus	Lightbulbvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cellulophaga baltica #18	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lightbulbvirus	Lightbulbvirus Cba41	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT962247	Cellulophaga phage phi17:2_18	145343	32.651	Cellulophaga	Group I	Lightbulbvirus	Lightbulbvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cellulophaga baltica #18	High-quality	High-quality	99.640	AAI-based (high-confidence)	Lightbulbvirus	Lightbulbvirus Cba172	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT962832	Salmonella phage fSE1C	41720	49.732	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica	High-quality	High-quality	97.280	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus f18SE	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT964103	Klebsiella phage KpV41	44203	53.967	Klebsiella	Group I	Drulisvirus	Drulisvirus	Slopekvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	Complete	High-quality	100.000	DTR (high-confidence)	Drulisvirus	Drulisvirus KpV41	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KT967075	Bacillus phage phi4I1	41999	35.282	Bacillus	Group I	Camtrevirus	Camtrevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus thuringiensis 4I1	High-quality	High-quality	100.000	AAI-based (high-confidence)	Camtrevirus	Camtrevirus BtCS33	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_17;integrase orf_29;antirepressor orf_38;integrase orf_54
KT968831	Pseudomonas phage YMC11/02/R656	60919	58.739	Pseudomonas	Group I	Bugaksanvirus	Bugaksanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa YMC11/02/R656	High-quality	High-quality	100.000	AAI-based (high-confidence)	Bugaksanvirus	Bugaksanvirus R656	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_55
KT968832	Pseudomonas phage YMC11/11/R1836	37714	64.249	Pseudomonas	Group I	Casadabanvirus	Casadabanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa YMC11/11/R1836	High-quality	High-quality	98.230	AAI-based (high-confidence)	Casadabanvirus	Casadabanvirus MP29	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_1;integrase orf_5