Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KT919972Vibrio phage phi-Grn124860541.259VibrioGroup I SchizotequatrovirusSchizotequatrovirusUnclassifiedStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio alginolyticus V1CompleteHigh-quality100.000DTR (high-confidence) SchizotequatrovirusSchizotequatrovirus valkk3Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KT919973Vibrio phage phi-ST225048541.231VibrioGroup I SchizotequatrovirusSchizotequatrovirusUnclassifiedStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio alginolyticus V1High-qualityHigh-quality94.110AAI-based (high-confidence) SchizotequatrovirusSchizotequatrovirus vh7dCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KT932418Vibrio phage qdvp00113474235.349VibrioGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio parahaemolyticus ATCC 17802High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
KT932699Enterococcus phage vB_EfaS_IME1985800040.019EnterococcusGroup I SaphexavirusSaphexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalis 2008High-qualityHigh-quality100.000AAI-based (high-confidence) SaphexavirusSaphexavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KT932700Enterococcus phage vB_EfaP_IME1951865533.203EnterococcusGroup I CopernicusvirusCopernicusvirusSarlesvirinaeRountreeviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalis 2003CompleteHigh-quality100.000ITR (high-confidence) CopernicusvirusCopernicusvirus IME195Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KT932701Enterococcus phage vB_EfaS_IME1963888634.974EnterococcusGroup I EfquatrovirusEfquatrovirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalis 2007High-qualityHigh-quality95.500AAI-based (high-confidence) EfquatrovirusEfquatrovirus IME196Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KT934381Propionibacterium phage PA1-142940753.851PropionibacteriumGroup I PahexavirusPahexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Propionibacterium acnes A1-14High-qualityHigh-quality99.820AAI-based (high-confidence) PahexavirusPahexavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KT934943Klebsiella phage vB_KpnM_KB5714298744.616KlebsiellaGroup I MydovirusMydovirusVequintavirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniae M-9High-qualityHigh-quality96.910AAI-based (high-confidence) MydovirusMydovirus KB57The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
KT945994Enterococcus phage vB_EfaS_IME1974109834.058EnterococcusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalisHigh-qualityHigh-quality99.370AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_31;cro orf_38;antirepressor orf_39
KT945995Enterococcus phage vB_EfaP_IME1991883834.627EnterococcusGroup I MinhovirusMinhovirusSarlesvirinaeRountreeviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faeciumCompleteHigh-quality100.000ITR (high-confidence) MinhovirusMinhovirus IME199Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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