INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
AP018470	Mycobacterium phage Y2	57990	67.882	Mycobacterium	Group I	Fionnbharthvirus	Fionnbharthvirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fionnbharthvirus	Fionnbharthvirus fionnbharth	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_43;immunity orf_45;cro orf_46
AP018471	Mycobacterium phage Y10	57990	67.888	Mycobacterium	Group I	Fionnbharthvirus	Fionnbharthvirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fionnbharthvirus	Fionnbharthvirus fionnbharth	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_43;immunity orf_45;cro orf_46
AP018476	Mycobacterium phage C3	51141	63.122	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	97.420	AAI-based (high-confidence)	Fromanvirus	Fromanvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_30
AP018477	Mycobacterium phage BK1	49728	63.761	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	95.780	AAI-based (high-confidence)	Fromanvirus	Fromanvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_34;immunity orf_65
AP018478	Mycobacterium phage A6	49728	63.761	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	95.780	AAI-based (high-confidence)	Fromanvirus	Fromanvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_34;immunity orf_65
AP018479	Mycobacterium phage GS4E	49823	63.378	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	94.800	AAI-based (high-confidence)	Turbidovirus	Turbidovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	parA orf_32;immunity orf_74
AP018480	Fromanvirus D29	49136	63.532	Unspecified	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	93.500	AAI-based (high-confidence)	Fromanvirus	Fromanvirus D29	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_32
AP018485	Mycobacterium phage B1	45961	64.059	Mycobacterium	Group I	Veracruzvirus	Veracruzvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	91.830	AAI-based (high-confidence)	Veracruzvirus	Veracruzvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_30;immunity orf_62
AP018486	Mycobacterium phage PP	51509	64.486	Mycobacterium	Group I	Sagamiharavirus	Sagamiharavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Sagamiharavirus	Sagamiharavirus PP	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_39;immunity orf_65
AP018487	Mycobacterium phage HC	46305	67.172	Mycobacterium	Group I	Brujitavirus	Brujitavirus	Chebruvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	96.230	AAI-based (high-confidence)	Brujitavirus	Brujitavirus HC	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	antirepressor orf_32