Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
AP017903Azobacteroides phage ProJPt-Bp19951742.309AzobacteroidesGroup I DechshavirusDechshavirusUnclassifiedSuoliviridaeCrassviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Candidatus Azobacteroides pseudotrichonymphaeHigh-qualityHigh-quality100.000AAI-based (high-confidence) DechshavirusDechshavirus japanensisCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_58
AP017924Ralstonia phage RP1227984553.404RalstoniaGroup I RipduovirusRipduovirusUnclassifiedChimalliviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Ralstonia solanacearumHigh-qualityHigh-quality100.000AAI-based (high-confidence) RipduovirusRipduovirus RP12Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_54
AP017925Ralstonia phage RP3127695853.346RalstoniaGroup I RipduovirusRipduovirusUnclassifiedChimalliviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Ralstonia solanacearumHigh-qualityHigh-quality98.970AAI-based (high-confidence) RipduovirusRipduovirus RP12Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
AP017972Vibrio phage pTD123927644.546VibrioGroup I TidunavirusTidunavirusGorgonvirinaeChimalliviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio ParahaemolyticusHigh-qualityHigh-quality99.850AAI-based (high-confidence) TidunavirusTidunavirus pTD1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_148
AP018361Lactobacillus phage T253842144.541LactobacillusGroup I SukhumvitvirusSukhumvitvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactobacillus paracaseiHigh-qualityHigh-quality95.800AAI-based (high-confidence) SukhumvitvirusSukhumvitvirus T25Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;antirepressor orf_35
AP018375Staphylococcus phage phiSA03914103830.378StaphylococcusGroup I KayvirusKayvirusTwortvirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality99.600AAI-based (high-confidence) KayvirusKayvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
AP018399Xanthomonas phage XacN138467050.439XanthomonasGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Xanthomonas citriCompleteHigh-quality100.000DTR (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperatecro orf_172
AP018462Mycobacterium phage D126129067.605MycobacteriumGroup I NorthamptonvirusNorthamptonvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality99.580AAI-based (high-confidence) NorthamptonvirusNorthamptonvirus tapticCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
AP018463Mycobacterium phage PR6126767.593MycobacteriumGroup I NorthamptonvirusNorthamptonvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality99.550AAI-based (high-confidence) NorthamptonvirusNorthamptonvirus tapticCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
AP018469Mycobacterium phage Y105799067.882MycobacteriumGroup I FionnbharthvirusFionnbharthvirusWeiservirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality100.000AAI-based (high-confidence) FionnbharthvirusFionnbharthvirus fionnbharthCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_43;immunity orf_45;cro orf_46
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