INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KP202969 | Achromobacter phage JWX | 49714 | 55.413 | Achromobacter | Group I | Steinhofvirus | Steinhofvirus | Alvaradovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter xylosoxidans | Complete | High-quality | 100.000 | DTR (high-confidence) | Steinhofvirus | Steinhofvirus JWX | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KP202970 | Achromobacter phage 83-24 | 48216 | 54.853 | Achromobacter | Group I | Amaduovirus | Amaduovirus | Alvaradovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter xylosoxidans | Complete | High-quality | 100.000 | DTR (high-confidence) | Amaduovirus | Amaduovirus sv8324 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KP202971 | Achromobacter phage JWF | 81541 | 60.138 | Achromobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter xylosoxidans | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KP202972 | Paenibacillus phage HB10c2 | 35644 | 41.844 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | Medium-quality | Genome-fragment | 89.170 | AAI-based (high-confidence) | Fernvirus | Fernvirus Hb10c2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_26;integrase orf_27;antirepressor orf_30;antirepressor orf_32;antirepressor orf_35 |
| KP208803 | Streptococcus phage Str-PAP-1 | 36595 | 35.289 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus parauberis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | cro orf_14 |
| KP209285 | Staphylococcus phage phiNM4-gamma4 | 40365 | 35.102 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus str. Newman | High-quality | High-quality | 94.020 | AAI-based (high-confidence) | Phietavirus | Phietavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_5;integrase orf_35 |
| KP211958 | Cyanophage P-TIM40 | 188632 | 40.717 | Prochlorococcus | Group I | Libanvirus | Libanvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus sp. NATL2A | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Libanvirus | Libanvirus ptim40 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KP233880 | Pseudomonas phage PhiCHU | 45626 | 52.021 | Pseudomonas | Group I | Bruynoghevirus | Bruynoghevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Bruynoghevirus | Bruynoghevirus CHU | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KP238129 | Sulfolobus monocaudavirus SMV2 | 50918 | 43.552 | Sulfolobus | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sulfolobus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_34 |
| KP273225 | Mycobacterium phage Sheen | 52927 | 63.387 | Mycobacterium | Group I | Sheenvirus | Sheenvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sheenvirus | Sheenvirus Sheen | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_30;immunity orf_67 |