INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KP137436	Mannheimia phage vB_MhM_1127AP1	36745	41.984	Mannheimia	Group I	Baylorvirus	Baylorvirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mannheimia haemolytica 1127A serotype A2	High-quality	High-quality	100.000	AAI-based (high-confidence)	Baylorvirus	Baylorvirus bv1127AP1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_35;cro orf_36;integrase orf_53
KP137437	Mannheimia phage vB_MhS_1152AP2	52139	41.094	Mannheimia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mannheimia haemolytica 1152A serotype A6	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_30;antirepressor orf_34;cro orf_56;cro orf_57
KP137438	Mannheimia phage vB_MhM_2256AP1	34926	41.519	Mannheimia	Group I	Baylorvirus	Baylorvirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mannheimia haemolytica 2256A serotype A1	High-quality	High-quality	97.680	AAI-based (high-confidence)	Baylorvirus	Baylorvirus PHL101	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_36;cro orf_37;integrase orf_52
KP137439	Mannheimia phage vB_MhS_3927AP1	52049	41.371	Mannheimia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mannheimia haemolytica 3927A serotype A6	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_33;antirepressor orf_37;cro orf_59;cro orf_60
KP137440	Mannheimia phage vB_MhM_3927AP2	33755	43.137	Mannheimia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mannheimia haemolytica 3927A	High-quality	High-quality	96.660	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
KP143762	Salmonella phage Mushroom	87709	39.035	Salmonella	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella sp.	High-quality	High-quality	99.610	AAI-based (high-confidence)	Felixounavirus	Felixounavirus mushroom	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP143763	Salmonella phage Shivani	120098	38.839	Salmonella	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium	Complete	High-quality	100.000	DTR (high-confidence)	Tequintavirus	Tequintavirus shivani	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KP144388	Geobacillus virus E3	141298	29.635	Geobacillus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_31;integrase orf_60;integrase orf_161;integrase orf_163
KP162168	Paracoccus phage vB_PmaS-R3	42093	56.368	Paracoccus	Group I	Zhuquevirus	Zhuquevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Paracoccus marcusii JL-65	High-quality	High-quality	100.000	AAI-based (high-confidence)	Zhuquevirus	Zhuquevirus R3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KP202158	Yersinia phage vB_YenM_TG1	162101	34.560	Yersinia	Group I	Tegunavirus	Tegunavirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia enterocolitica	High-quality	High-quality	96.310	AAI-based (high-confidence)	Tegunavirus	Tegunavirus yenmtg1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic