INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KM236247	Bacillus phage Pascal	39639	39.870	Bacillus	Group I	Pagevirus	Pagevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus megaterium	High-quality	High-quality	99.380	AAI-based (high-confidence)	Pagevirus	Pagevirus pascal	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KM236248	Bacillus phage Pookie	40214	40.573	Bacillus	Group I	Pagevirus	Pagevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus megaterium	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pagevirus	Pagevirus pookie	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KM236502	Mycobacterium phage Eremos	68472	66.531	Mycobacterium	Group I	Pegunavirus	Pegunavirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.550	AAI-based (high-confidence)	Pegunavirus	Pegunavirus suffolk	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM242061	Escherichia phage CICC 80001	38810	48.820	Escherichia	Group I	Teseptimavirus	Teseptimavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli HY05C	High-quality	High-quality	97.240	AAI-based (high-confidence)	Teseptimavirus	Teseptimavirus CICC80001	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM247287	Escherichia phage J8-65	40981	55.687	Escherichia	Group I	Bonnellvirus	Bonnellvirus	Stentvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli K-12 IJ2038	Complete	High-quality	100.000	DTR (high-confidence)	Bonnellvirus	Bonnellvirus J865	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM253764	Yersinia phage vB_YenP_AP5	38646	50.696	Yersinia	Group I	Teetrevirus	Teetrevirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia enterocolitica serotype O:3	Complete	High-quality	100.000	DTR (high-confidence)	Teetrevirus	Teetrevirus AP5	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM262191	Leuconostoc phage Ln-8	28921	36.140	Leuconostoc	Group I	Unaquatrovirus	Unaquatrovirus	Mccleskeyvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Leuconostoc mesenteroides subsp. mesenteroides D6a	Complete	High-quality	100.000	DTR (high-confidence)	Unaquatrovirus	Unaquatrovirus LN25	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM262192	Leuconostoc phage Ln-9	28527	36.439	Leuconostoc	Group I	Unaquatrovirus	Unaquatrovirus	Mccleskeyvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Leuconostoc mesenteroides subsp. mesenteroides L79-1	Complete	High-quality	100.000	DTR (high-confidence)	Unaquatrovirus	Unaquatrovirus Ln9	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM272358	Salmonella phage LSPA1	41880	50.487	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella paratyphi A CMCC50973	High-quality	High-quality	97.660	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus LSPA1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KM279937	Mycobacterium phage Estave1	60727	61.324	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus estave1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_42;immunity orf_44;antirepressor orf_45