Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KM233689Pseudomonas phage H703735964.250PseudomonasGroup I CasadabanvirusCasadabanvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosa Ps33High-qualityHigh-quality97.630AAI-based (high-confidence) CasadabanvirusCasadabanvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperatecro orf_1
KM236237Citrobacter phage Miller17817143.130CitrobacterGroup I PseudotevenvirusPseudotevenvirusUnclassifiedStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality99.910AAI-based (high-confidence) PseudotevenvirusPseudotevenvirus millerCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KM236239Citrobacter phage Moogle8799938.982CitrobacterGroup I MooglevirusMooglevirusOunavirinaeAndersonviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Citrobacter freundiiHigh-qualityHigh-quality99.890AAI-based (high-confidence) MooglevirusMooglevirus moogleThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperatecro orf_38
KM236240Citrobacter phage Moon17034138.876CitrobacterGroup I MoonvirusMoonvirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Citrobacter freundiiHigh-qualityHigh-quality100.000AAI-based (high-confidence) MoonvirusMoonvirus moonCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KM236241Citrobacter phage Stevie4981642.838CitrobacterGroup I TlsvirusTlsvirusTempevirinaeDrexlerviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Citrobacter freundiiHigh-qualityHigh-quality98.880AAI-based (high-confidence) TlsvirusTlsvirus stevieCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_79
KM236242Escherichia phage Pollock6836536.020EscherichiaGroup I PollockvirusPollockvirusHumphriesvirinaeSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliCompleteHigh-quality100.000DTR (high-confidence) PollockvirusPollockvirus pollockCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KM236243Escherichia phage Seurat5677644.575EscherichiaGroup I SeuratvirusSeuratvirusQueuovirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliHigh-qualityHigh-quality95.270AAI-based (high-confidence) SeuratvirusSeuratvirus seuratCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KM236244Salmonella phage Stitch12347540.307SalmonellaGroup I EpseptimavirusEpseptimavirusMarkadamsvirinaeDemerecviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. enterica serovar TyphimuriumCompleteHigh-quality100.000DTR (high-confidence) EpseptimavirusEpseptimavirus stitchThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
KM236245Bacillus phage Mater16430239.466BacillusGroup I MatervirusMatervirusBastillevirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus megateriumCompleteHigh-quality100.000DTR (high-confidence) MatervirusMatervirus materCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KM236246Bacillus phage Moonbeam16123940.132BacillusGroup I MoonbeamvirusMoonbeamvirusBastillevirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus megateriumCompleteHigh-quality100.000DTR (high-confidence) MoonbeamvirusMoonbeamvirus moonbeamCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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