Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KJ567044Mycobacterium phage EmpTee6842866.476MycobacteriumGroup I PegunavirusPegunavirusBclasvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality98.490AAI-based (high-confidence) PegunavirusPegunavirus Pg1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KJ567045Mycobacterium phage Emerson6031066.599MycobacteriumGroup I AnayavirusAnayavirusWeiservirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality98.550AAI-based (high-confidence) AnayavirusAnayavirus adephagiaThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_40;immunity orf_42
KJ567046Mycobacterium phage Damien6838657.604MycobacteriumGroup I KonstantinevirusKonstantinevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality98.420AAI-based (high-confidence) KonstantinevirusKonstantinevirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KJ572844Vibrio phage 244439545.390VibrioGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio choleraeHigh-qualityHigh-quality99.790AAI-based (high-confidence) ComeauvirusComeauvirus CPT1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KJ572845Vibrio phage X294156946.068VibrioGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio choleraeHigh-qualityHigh-quality95.310AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_35;cro orf_41;antirepressor orf_42;integrase orf_45
KJ578758Propionibacterium phage PHL009M112950353.937PropionibacteriumGroup I PahexavirusPahexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Propionibacterium acnesHigh-qualityHigh-quality100.000AAI-based (high-confidence) PahexavirusPahexavirus PHL009M11Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KJ578759Propionibacterium phage PHL025M002949653.984PropionibacteriumGroup I PahexavirusPahexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Propionibacterium acnesHigh-qualityHigh-quality100.000AAI-based (high-confidence) PahexavirusPahexavirus PHL025M00Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KJ578760Propionibacterium phage PHL030N002942353.910PropionibacteriumGroup I PahexavirusPahexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Propionibacterium acnesHigh-qualityHigh-quality99.880AAI-based (high-confidence) PahexavirusPahexavirus PHL117M01Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KJ578761Propionibacterium phage PHL041M102941254.270PropionibacteriumGroup I PahexavirusPahexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Propionibacterium acnesHigh-qualityHigh-quality99.840AAI-based (high-confidence) PahexavirusPahexavirus PHL041M10Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KJ578762Propionibacterium phage PHL055N002926454.159PropionibacteriumGroup I PahexavirusPahexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Propionibacterium acnesHigh-qualityHigh-quality99.340AAI-based (high-confidence) PahexavirusPahexavirus PHL194M00Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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