INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KJ538721	Mycobacterium phage MosMoris	65243	63.352	Mycobacterium	Group I	Marvinvirus	Marvinvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.560	AAI-based (high-confidence)	Marvinvirus	Marvinvirus mosmoris	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KJ538722	Mycobacterium phage HH92	53746	67.447	Mycobacterium	Group I	Gilesvirus	Gilesvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.970	AAI-based (high-confidence)	Gilesvirus	Gilesvirus giles	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_29
KJ538723	Mycobacterium phage KingVeVeVe	68043	66.502	Mycobacterium	Group I	Pegunavirus	Pegunavirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.940	AAI-based (high-confidence)	Pegunavirus	Pegunavirus soto	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ545483	Vibrio phage phi 2	41476	46.063	Vibrio	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	95.100	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_35;cro orf_41;antirepressor orf_42;integrase orf_45
KJ564036	Lactobacillus phage Ld25A	32799	41.663	Lactobacillus	Group I	Cequinquevirus	Cequinquevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus delbrueckii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cequinquevirus	Cequinquevirus Ld25A	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_22;antirepressor orf_36
KJ564037	Lactobacillus phage Ld17	32975	41.498	Lactobacillus	Group I	Cequinquevirus	Cequinquevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus delbrueckii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cequinquevirus	Cequinquevirus Ld17	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ564038	Lactobacillus phage Ld3	29616	41.646	Lactobacillus	Group I	Cequinquevirus	Cequinquevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus delbrueckii	High-quality	High-quality	92.800	AAI-based (high-confidence)	Cequinquevirus	Cequinquevirus Ld3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ567041	Mycobacterium phage Zapner	55307	61.106	Mycobacterium	Group I	Avanivirus	Avanivirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.620	AAI-based (high-confidence)	Avanivirus	Avanivirus zapner	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_51;immunity orf_52;cro orf_53
KJ567042	Mycobacterium phage OkiRoe	62661	64.938	Mycobacterium	Group I	Kratiovirus	Kratiovirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kratiovirus	Kratiovirus gengar	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_35;immunity orf_37;cro orf_38
KJ567043	Mycobacterium phage Gaia	90460	56.831	Mycobacterium	Group I	Gaiavirus	Gaiavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gaiavirus	Gaiavirus gaia	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_48