INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AP012535 | Stx2-converting phage Stx2a_WGPS9 | 56224 | 49.945 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain 981795 | Medium-quality | Genome-fragment | 85.800 | AAI-based (high-confidence) | Traversvirus | Traversvirus WGPS9 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_13;cro orf_14;antirepressor orf_37;antirepressor orf_71 |
| AP012536 | Stx2-converting phage Stx2a_1447 | 57034 | 51.333 | Unspecified | Group I | Sawaravirus | Sawaravirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain 1447 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sawaravirus | Sawaravirus WGPS2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_8;antirepressor orf_11;antirepressor orf_34 |
| AP012537 | Stx2-converting phage Stx2a_WGPS2 | 58326 | 51.380 | Unspecified | Group I | Sawaravirus | Sawaravirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain 980938 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sawaravirus | Sawaravirus WGPS2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_8;antirepressor orf_11;antirepressor orf_35 |
| AP012538 | Stx2-converting phage Stx2a_WGPS4 | 58538 | 50.922 | Unspecified | Group I | Pankowvirus | Pankowvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain 990281 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pankowvirus | Pankowvirus pv1717 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_23;cro orf_24;antirepressor orf_37;antirepressor orf_77 |
| AP012539 | Stx2-converting phage Stx2a_WGPS6 | 57849 | 50.678 | Unspecified | Group I | Pankowvirus | Pankowvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain 990570 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pankowvirus | Pankowvirus WGPS6 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;antirepressor orf_5;antirepressor orf_6;cro orf_24;cro orf_25;antirepressor orf_35;antirepressor orf_36;antirepressor orf_71 |
| AP012540 | Stx2-converting phage Stx2a_WGPS8 | 55023 | 51.030 | Unspecified | Group I | Pankowvirus | Pankowvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain 982243 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pankowvirus | Pankowvirus WGPS8 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_23;cro orf_24;antirepressor orf_34;antirepressor orf_72 |
| AP013029 | Bacillus phage phiNIT1 | 155631 | 42.118 | Bacillus | Group I | Nitunavirus | Nitunavirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis (natto) | Complete | High-quality | 100.000 | DTR (high-confidence) | Nitunavirus | Nitunavirus NIT1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AP013057 | Edwardsiella phage PEi21 | 43378 | 52.570 | Edwardsiella | Group I | Yokohamavirus | Yokohamavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Edwardsiella ictaluri | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Yokohamavirus | Yokohamavirus PEi21 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AP013538 | uncultured phage_MedDCM-OCT-S45-C4 | 44705 | 45.288 | Unspecified | Group I | Ashivirus | Ashivirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Ashivirus | Ashivirus S45C4 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| AP013539 | uncultured phage_MedDCM-OCT-S28-C3 | 43444 | 46.729 | Unspecified | Group I | Pedosvirus | Pedosvirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Complete | High-quality | 100.000 | DTR (high-confidence) | Pedosvirus | Pedosvirus S28C3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |