INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AP011617 | Thermus phage TMA | 151483 | 32.625 | Thermus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Thermus thermophilus HB27 | High-quality | High-quality | 97.550 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AP011955 | Staphylococcus phage phi5967PVL | 42461 | 33.311 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus phi7247PVL | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_2;cro orf_8;antirepressor orf_15 |
| AP011956 | Staphylococcus phage phi7247PVL | 42481 | 33.309 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus phi7247PVL | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_2;cro orf_8;antirepressor orf_15 |
| AP012341 | Staphylococcus phage phi7401PVL | 47252 | 33.044 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Triavirus | Triavirus JS02 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_3;integrase orf_4;cro orf_10;integrase orf_33 |
| AP012529 | Stx2-converting phage Stx2a_F403 | 63369 | 49.477 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain F403 | High-quality | High-quality | 96.680 | AAI-based (high-confidence) | Traversvirus | Traversvirus min27 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_28;cro orf_29;antirepressor orf_40;antirepressor orf_54;antirepressor orf_88 |
| AP012530 | Stx2-converting phage Stx2a_F349 | 59872 | 50.997 | Unspecified | Group I | Pankowvirus | Pankowvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain F349 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pankowvirus | Pankowvirus pv1717 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_23;cro orf_24;antirepressor orf_40;antirepressor orf_79 |
| AP012531 | Stx2-converting phage Stx2a_F422 | 63253 | 49.451 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain F422 | High-quality | High-quality | 96.540 | AAI-based (high-confidence) | Traversvirus | Traversvirus tv933W | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_30;cro orf_31;antirepressor orf_55;antirepressor orf_91 |
| AP012532 | Stx2-converting phage Stx2a_F451 | 64900 | 49.767 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain F451 | Complete | High-quality | 100.000 | DTR (high-confidence) | Traversvirus | Traversvirus F451 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;antirepressor orf_5;antirepressor orf_6;antirepressor orf_7;cro orf_32;cro orf_33;antirepressor orf_44;antirepressor orf_61 |
| AP012533 | Stx2-converting phage Stx2a_F723 | 62274 | 49.319 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain F723 | Complete | High-quality | 100.000 | DTR (high-confidence) | Traversvirus | Traversvirus P27 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;antirepressor orf_8;cro orf_32;cro orf_33;antirepressor orf_44;antirepressor orf_58 |
| AP012534 | Stx2-converting phage Stx2a_F765 | 63552 | 50.176 | Unspecified | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain F765 | High-quality | High-quality | 96.360 | AAI-based (high-confidence) | Oslovirus | Oslovirus PA2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;antirepressor orf_12;antirepressor orf_32;cro orf_35;cro orf_36 |