INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OP627531 | Pseudomonas phage vB-PaeM-YQ78 | 92892 | 49.345 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | Pakpunavirus | Pakpunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP628074 | Vibrio phage vB_VpI_FR1 | 6080 | 42.928 | Vibrio | Group II | Villovirus | Villovirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio parahaemolyticus | Medium-quality | Genome-fragment | 61.710 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| OP628075 | Lysinibacillus phage vB_LfM_LysYB1 | 143758 | 41.839 | Lysinibacillus | Group I | Spounavirinae | Unclassified | Spounavirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lysinibacillus fusiformis | High-quality | High-quality | 97.330 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_28 |
| OP628076 | Lysinibacillus phage vB_LfM_LysYB2 | 145377 | 41.840 | Lysinibacillus | Group I | Spounavirinae | Unclassified | Spounavirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lysinibacillus fusiformis | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_51 |
| OP630574 | Halorubrum tailed virus | 37702 | 63.734 | Halorubrum | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halorubrum lacusprofundi | Medium-quality | Genome-fragment | 87.690 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP630575 | Halorubrum tailed virus | 66249 | 63.612 | Halorubrum | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halorubrum lacusprofundi | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP630576 | Halorubrum tailed virus | 28605 | 62.870 | Halorubrum | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halorubrum lacusprofundi | Medium-quality | Genome-fragment | 58.690 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP646176 | Bacillus phage vB_BceS_LY5 | 42221 | 42.370 | Bacillus | Group I | Layangbvirus | Layangbvirus | Gutmannvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus | Complete | High-quality | 100.000 | DTR (high-confidence) | Layangbvirus | Layangbvirus LY5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_54 |
| OP650936 | Hujiaoplasma phage zrk29-1 | 47902 | 63.166 | Hujiaoplasma | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Tenericutes bacterium zrk29 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_2;integrase orf_34 |
| OP650937 | Hujiaoplasma phage zrk29-2 | 41808 | 41.320 | Hujiaoplasma | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Tenericutes bacterium zrk29 | Medium-quality | Genome-fragment | 80.830 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_22;antirepressor orf_31 |