INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KF772234	Edwardsiella phage eiAU-183	43017	55.436	Edwardsiella	Group I	Eiauvirus	Eiauvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Edwardsiella ictaluri	High-quality	High-quality	100.000	AAI-based (high-confidence)	Eiauvirus	Eiauvirus eiAU	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KF787094	Achromobacter phage JWDelta	73659	54.251	Achromobacter	Group I	Jwalphavirus	Jwalphavirus	Rothmandenesvirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Achromobacter xylosoxidans DSM 11852	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jwalphavirus	Jwalphavirus jwalpha	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KF787095	Achromobacter phage JWAlpha	72329	54.412	Achromobacter	Group I	Jwalphavirus	Jwalphavirus	Rothmandenesvirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Achromobacter xylosoxidans DSM 11852	Complete	High-quality	100.000	DTR (high-confidence)	Jwalphavirus	Jwalphavirus jwalpha	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KF800937	Vibrio phage AS51	42542	43.470	Vibrio	Group I	Kaohsiungvirus	Kaohsiungvirus	Colwellvirinae	Autosignataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio alginolyticus	High-quality	High-quality	95.990	AAI-based (high-confidence)	Kaohsiungvirus	Kaohsiungvirus A318	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KF806588	Erwinia phage Ea9-2	75568	47.041	Erwinia	Group I	Johnsonvirus	Johnsonvirus	Erskinevirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia amylovora strain Ea17-1-1	High-quality	High-quality	100.000	AAI-based (high-confidence)	Johnsonvirus	Johnsonvirus Ea92	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KF806589	Erwinia phage Ea35-70	271084	49.881	Erwinia	Group I	Agricanvirus	Agricanvirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia amylovora strain Ea29-7	High-quality	High-quality	97.850	AAI-based (high-confidence)	Agricanvirus	Agricanvirus Ea3570	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KF811200	Acinetobacter phage IMEAB3	43050	45.475	Acinetobacter	Group I	Lokivirus	Lokivirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lokivirus	Lokivirus IMEAB3	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KF831354	Staphylococcus phage phiBU01	43748	33.016	Staphylococcus	Group I	Biseptimavirus	Biseptimavirus	Bronfenbrennervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus HIP07256	High-quality	High-quality	100.000	AAI-based (high-confidence)	Biseptimavirus	Biseptimavirus BU01	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_33;antirepressor orf_56;antirepressor orf_58;cro orf_59;cro orf_60;integrase orf_67
KF835987	Pectobacterium bacteriophage PM2	170286	34.785	Pectobacterium	Group I	Mosugukvirus	Mosugukvirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	98.040	AAI-based (high-confidence)	Mosugukvirus	Mosugukvirus pm2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KF841475	Mycobacterium phage BellusTerra	51236	63.857	Mycobacterium	Group I	Backyardiganvirus	Backyardiganvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Backyardiganvirus	Backyardiganvirus bellusterra	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;immunity orf_64