INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KF751797 | Campylobacter phage CJIE4-5 | 36991 | 28.704 | Campylobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Campylobacter jejuni subsp. jejuni 01-1512 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1 |
| KF765493 | Klebsiella phage F19 | 43766 | 53.820 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.800 | AAI-based (high-confidence) | Drulisvirus | Drulisvirus F19 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF766114 | Staphylococcus phage K | 148317 | 30.386 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayvirus | Kayvirus kay | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF766125 | Shigella phage 75/02 Stx | 60875 | 49.117 | Shigella | Group I | Diegovirus | Diegovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella sonnei 75/02 | High-quality | High-quality | 92.750 | AAI-based (high-confidence) | Diegovirus | Diegovirus dv7502Stx | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_26;antirepressor orf_42;antirepressor orf_75;antirepressor orf_76 |
| KF767351 | Lactobacillus phage phi jlb1 | 38269 | 37.359 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus gasseri ADH | High-quality | High-quality | 97.990 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1 |
| KF771236 | Escherichia phage bV_EcoS_AHP24 | 46719 | 43.830 | Escherichia | Group I | Rogunavirus | Rogunavirus | Rogunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | E. coli O157:H7 R508 (phage type 14) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Rogunavirus | Rogunavirus AHS24 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF771237 | Escherichia phage vB_EcoS_AHP42 | 46847 | 43.977 | Escherichia | Group I | Rogunavirus | Rogunavirus | Rogunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | E. coli O157:H7 R508 (phage type 14) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Rogunavirus | Rogunavirus AHP42 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF771238 | Escherichia phage vB_EcoS_AHS24 | 46440 | 43.811 | Escherichia | Group I | Rogunavirus | Rogunavirus | Rogunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | E. coli O157:H7 R508 (phage type 14) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Rogunavirus | Rogunavirus AHS24 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF771239 | Escherichia phage vB_EcoS_AKS96 | 45746 | 43.943 | Escherichia | Group I | Rogunavirus | Rogunavirus | Rogunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | E. coli O157:H7 R508 (phage type 14) | High-quality | High-quality | 98.890 | AAI-based (high-confidence) | Rogunavirus | Rogunavirus AKS96 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF772233 | Edwardsiella phage eiAU | 43015 | 55.432 | Edwardsiella | Group I | Eiauvirus | Eiauvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Edwardsiella ictaluri | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Eiauvirus | Eiauvirus eiAU | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |