INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KF589919 | Staphylococcus phage phiRS7 | 43394 | 34.267 | Staphylococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus saprophyticus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_28;cro orf_30 |
| KF591601 | Enterobacteria phage IME_EC2 | 41510 | 59.157 | Enterobacteria | Group I | Murrayvirus | Murrayvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 147-30R1 | High-quality | High-quality | 99.470 | AAI-based (high-confidence) | Murrayvirus | Murrayvirus EC2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KF598856 | Staphylococcus phage YMC/09/04/R1988 | 44459 | 33.370 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | methicillin-resistant Staphylococcus aureus YMC/09/04/R1988 | High-quality | High-quality | 95.710 | AAI-based (high-confidence) | Triavirus | Triavirus R1988 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_26;cro orf_31;integrase orf_55 |
| KF598865 | Cyanophage PP | 42480 | 46.408 | Unspecified | Unclassified | Podoviridae | Unclassified | Unclassified | Podoviridae | Caudovirales | Unclassified | Unclassified | Unclassified | Unclassified | Phormidium foveolarum | High-quality | High-quality | 98.220 | AAI-based (high-confidence) | Wumptrevirus | Wumptrevirus PP | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF614509 | Rhizobium phage vB_RleS_L338C | 109558 | 59.003 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium leguminosarum biovar viciae 3841 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KF620435 | Shigella phage pSb-1 | 71629 | 42.742 | Shigella | Group I | Gamaleyavirus | Gamaleyavirus | Enquatrovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella boydii ATCC 35966 | High-quality | High-quality | 99.330 | AAI-based (high-confidence) | Gamaleyavirus | Gamaleyavirus Sb1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF623293 | Vibrio phage SHOU24 | 77837 | 46.048 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KF623294 | Erwinia phage PhiEaH1 | 218339 | 52.341 | Erwinia | Group I | Iapetusvirus | Iapetusvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora B0.1960 (NCAIM, Hungary) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Iapetusvirus | Iapetusvirus EaH1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF626665 | Xylella phage Sano | 56147 | 62.361 | Xylella | Group I | Sanovirus | Sanovirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xylella fastidiosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sanovirus | Sanovirus sano | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF626666 | Xylella phage Paz | 43869 | 60.168 | Xylella | Group I | Pazvirus | Pazvirus | Gujervirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xylella fastidiosa | Complete | High-quality | 100.000 | DTR (high-confidence) | Pazvirus | Pazvirus paz | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |