INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KF147927 | Oenococcus phage phi9805 | 46145 | 38.860 | Oenococcus | Group I | Sozzivirus | Sozzivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sozzivirus | Sozzivirus sv9805 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_3 |
| KF148055 | Salmonella phage Jersey | 43447 | 49.971 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus jersey | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF148616 | Campylobacter phage CP8 | 132667 | 26.045 | Campylobacter | Group I | Fletchervirus | Fletchervirus | Unclassified | Connertonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Campylobacter jejuni subsp. jejuni | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fletchervirus | Fletchervirus CPX | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF156338 | Synechococcus phage ACG-2014h | 189311 | 40.491 | Synechococcus | Group I | Sedonavirus | Sedonavirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 98.920 | AAI-based (high-confidence) | Sedonavirus | Sedonavirus tusconh | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KF156339 | Synechococcus phage S-MbCM25 | 176044 | 39.092 | Synechococcus | Group I | Namakavirus | Namakavirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Namakavirus | Namakavirus smbcm6 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KF156340 | Synechococcus phage S-MbCM100 | 170438 | 39.369 | Synechococcus | Group I | Acionnavirus | Acionnavirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. WH7803 | High-quality | High-quality | 97.440 | AAI-based (high-confidence) | Acionnavirus | Acionnavirus monteraybay | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KF183314 | Oenococcus phage phiS11 | 46243 | 38.603 | Oenococcus | Group I | Sozzivirus | Sozzivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Oenococcus oeni Sarco S11 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sozzivirus | Sozzivirus S11 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_3 |
| KF183315 | Oenococcus phage phiS13 | 43454 | 38.970 | Oenococcus | Group I | Sozzivirus | Sozzivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Oenococcus oeni Sarco S13 | High-quality | High-quality | 96.130 | AAI-based (high-confidence) | Sozzivirus | Sozzivirus S13 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_3 |
| KF188409 | Lactobacillus phage phiJB | 36969 | 47.702 | Lactobacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_12;antirepressor orf_17 |
| KF188410 | Lactobacillus phage phiLdb | 33996 | 41.952 | Lactobacillus | Group I | Cequinquevirus | Cequinquevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus delbrueckii ATCC 11842 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cequinquevirus | Cequinquevirus Ldb | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_24;antirepressor orf_41 |