INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KF055347 | Escherichia phage JH2 | 87712 | 38.816 | Escherichia | Group I | Felixounavirus | Felixounavirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli VN2-O8:F4 ETEC | High-quality | High-quality | 99.620 | AAI-based (high-confidence) | Felixounavirus | Felixounavirus JH2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KF056323 | Haloarcula hispanica pleomorphic virus 2 | 8176 | 53.694 | Haloarcula | Group II | Alphapleolipovirus | Alphapleolipovirus | Unclassified | Pleolipoviridae | Haloruvirales | Huolimaviricetes | Saleviricota | Trapavirae | Floreoviria | Haloarcula hispanica ATCC 33960 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KF114874 | Mycobacterium phage Bobi | 59179 | 61.664 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | immunity orf_38;integrase orf_44;cro orf_47 |
| KF114875 | Mycobacterium phage Redno2 | 108297 | 60.879 | Mycobacterium | Group I | Omegavirus | Omegavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.610 | AAI-based (high-confidence) | Omegavirus | Omegavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_77;immunity orf_86 |
| KF114876 | Leptospira phage vB_LalZ_80412-LE1 | 86537 | 39.082 | Leptospira | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | frog | Medium-quality | Genome-fragment | 88.540 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_6;parA orf_8;integrase orf_71 |
| KF114877 | Leptospira phage vB_LnoZ_CZ214-LE1 | 87887 | 33.960 | Leptospira | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Didelphis marsupialis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | parA orf_23 |
| KF114878 | Leptospira phage vb_LkmZ_Bejolso9-LE1 | 47417 | 34.475 | Leptospira | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unspecified | Medium-quality | Genome-fragment | 59.680 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_24;integrase orf_31 |
| KF114879 | Leptospira phage vB_LbrZ_5399-LE1 | 87308 | 39.377 | Leptospira | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Homo sapiens | High-quality | High-quality | 98.700 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | parA orf_27;integrase orf_30 |
| KF114880 | Leptospira phage vB_LinZ_10-LE1 | 89607 | 39.436 | Leptospira | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Homo sapiens | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_6;parA orf_9 |
| KF147891 | Pseudomonas phage PaBG | 258139 | 55.815 | Pseudomonas | Group I | Baikalvirus | Baikalvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Baikalvirus | Baikalvirus PaBG | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_188;integrase orf_192;integrase orf_224 |