INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KC847113 | Bacillus phage PBP180 | 28205 | 40.801 | Bacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus pumilus strain CCTCC AB94180 | Medium-quality | Genome-fragment | 52.370 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KC853746 | Burkholderia phage JG068 | 41604 | 60.689 | Burkholderia | Group I | Mguuvirus | Mguuvirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia cenocepacia K56-2 | Complete | High-quality | 100.000 | DTR (high-confidence) | Mguuvirus | Mguuvirus JG068 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC862295 | Pseudomonas phage CHA_P1 | 88255 | 54.628 | Pseudomonas | Group I | Nankokuvirus | Nankokuvirus | Unclassified | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa CHA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nankokuvirus | Nankokuvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC862296 | Pseudomonas phage P3_CHA | 88097 | 54.827 | Pseudomonas | Group I | Nankokuvirus | Nankokuvirus | Unclassified | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa CHA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nankokuvirus | Nankokuvirus PAKP3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC862297 | Pseudomonas phage PAK_P1 | 93198 | 49.498 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAK | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pakpunavirus | Pakpunavirus PAKP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC862298 | Pseudomonas phage PAK_P2 | 92495 | 49.288 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAK | High-quality | High-quality | 99.460 | AAI-based (high-confidence) | Pakpunavirus | Pakpunavirus PAKP2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_38 |
| KC862299 | Pseudomonas phage PAK_P3 | 88097 | 54.827 | Pseudomonas | Group I | Nankokuvirus | Nankokuvirus | Unclassified | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAK | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nankokuvirus | Nankokuvirus PAKP3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC862300 | Pseudomonas phage PAK_P4 | 93147 | 49.267 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAK | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pakpunavirus | Pakpunavirus PAKP4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC862301 | Pseudomonas phage PAK_P5 | 88135 | 54.730 | Pseudomonas | Group I | Nankokuvirus | Nankokuvirus | Unclassified | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAK | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nankokuvirus | Nankokuvirus KPP10 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC900378 | Pseudomonas phage LKA5 | 64746 | 63.284 | Pseudomonas | Group I | Hollowayvirus | Hollowayvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Hollowayvirus | Hollowayvirus LKA5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_69 |