INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_111671 | Klebsiella phage Emom | 40788 | 52.562 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella oxytoca | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_111672 | Klebsiella phage Amrap | 41209 | 52.472 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella oxytoca | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_111749 | Salmonella phage MET_P1_103_31 | 31582 | 52.144 | Salmonella | Group I | Peduovirus | Peduovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.870 | AAI-based (high-confidence) | temperate | integrase orf_5;integrase orf_13 | |||
| NC_111751 | Salmonella phage MET_P1_137_112 | 112278 | 39.874 | Salmonella | Group I | Epseptimavirus | Epseptimavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.280 | AAI-based (high-confidence) | lytic | ||||
| NC_111760 | Escherichia phage vB_VIPECOOM03 | 168519 | 35.492 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli ATCC 25922 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus vipecoom | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| NC_112015 | Clostridium phage cpp | 19564 | 28.256 | Clostridium | Group I | Gregsiragusavirus | Gregsiragusavirus | Denniswatsonvirinae | Guelinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium perfringens | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_112203 | Enterococcus phage H1 | 138084 | 31.723 | Enterococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecium 374iF1 (22) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_112204 | Escherichia phage A73 | 142009 | 41.233 | Escherichia | Group I | Septuagintavirus | Septuagintavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli str. K-12 substr. MG1655 | High-quality | High-quality | 96.840 | AAI-based (high-confidence) | lytic | ||||
| NC_112206 | Listeria phage HS5 | 39936 | 36.313 | Listeria | Group I | Aquingentivirus | Aquingentivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes | High-quality | High-quality | 98.850 | AAI-based (high-confidence) | temperate | integrase orf_31;cro orf_36;antirepressor orf_45 | |||
| NC_112270 | Bacillus phage vB_BceS_LY5 | 42221 | 42.370 | Bacillus | Group I | Layangbvirus | Layangbvirus | Gutmannvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus | Complete | High-quality | 100.000 | DTR (high-confidence) | temperate | cro orf_54 |