INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_111398 | Salmonella phage GSW6 | 112942 | 40.179 | Salmonella | Group I | Epseptimavirus | Epseptimavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Infantis | High-quality | High-quality | 99.930 | AAI-based (high-confidence) | lytic | ||||
| NC_111478 | Enterococcus phage 53 | 139913 | 35.776 | Enterococcus | Group I | Kochikohdavirus | Kochikohdavirus | Brockvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_111480 | Klebsiella phage phi_KPN_HS3 | 49111 | 50.966 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | Webervirus | Webervirus KPNHS3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| NC_111484 | Salmonella phage vB_SenS_UTK0006 | 49758 | 42.803 | Salmonella | Group I | Tlsvirus | Tlsvirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Javiana str. FSL S5-0406 | High-quality | High-quality | 98.780 | AAI-based (high-confidence) | temperate | integrase orf_24 | |||
| NC_111487 | Salmonella phage vB_SenS_UTK0009 | 113742 | 40.300 | Salmonella | Group I | Epseptimavirus | Epseptimavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Braenderup str. FSL S5-0373 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_111488 | Salmonella phage vB_SenS_UTK0010 | 113248 | 40.294 | Salmonella | Group I | Epseptimavirus | Epseptimavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Oranienburg str. FSL R8-0376 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_111505 | Escherichia phage YP-6 | 139323 | 43.612 | Escherichia | Group I | Vequintavirus | Vequintavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_111513 | Shigella phage S2_02 | 50597 | 45.271 | Shigella | Group I | Tunavirus | Tunavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri 2a 2457 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_111528 | Leptolyngbya phage LPP-1 | 41561 | 52.128 | Leptolyngbya | Group I | Morrisvirus | Morrisvirus | Unclassified | Saffermanviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leptolyngbya boryana IU 594 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_111529 | Leptolyngbya phage LPP-2, strain SPI | 42319 | 46.511 | Leptolyngbya | Group I | Wumptrevirus | Wumptrevirus | Unclassified | Saffermanviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leptolyngbya boryana IU 594 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic |