INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KC013026 | Leuconostoc phage LN25 | 28427 | 36.191 | Leuconostoc | Group I | Unaquatrovirus | Unaquatrovirus | Mccleskeyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc mesenteroides LN25 | High-quality | High-quality | 98.560 | AAI-based (high-confidence) | Unaquatrovirus | Unaquatrovirus LN25 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC013027 | Leuconostoc phage LN34 | 28022 | 35.972 | Leuconostoc | Group I | Unaquatrovirus | Unaquatrovirus | Mccleskeyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc mesenteroides LN05 | High-quality | High-quality | 97.330 | AAI-based (high-confidence) | Unaquatrovirus | Unaquatrovirus LN34 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC013028 | Leuconostoc phage phiLNTR2 | 28336 | 36.014 | Leuconostoc | Group I | Unaquatrovirus | Unaquatrovirus | Mccleskeyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc mesenteroides LN05 | High-quality | High-quality | 98.430 | AAI-based (high-confidence) | Unaquatrovirus | Unaquatrovirus LN34 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC013029 | Leuconostoc phage phiLNTR3 | 28015 | 36.052 | Leuconostoc | Group I | Unaquatrovirus | Unaquatrovirus | Mccleskeyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc mesenteroides LN05 | High-quality | High-quality | 97.300 | AAI-based (high-confidence) | Unaquatrovirus | Unaquatrovirus LN34 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC107834 | Cronobacter phage vB_CskP_GAP227 | 41796 | 55.740 | Cronobacter | Group I | Cronosvirus | Cronosvirus | Melnykvirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii strain 51329 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cronosvirus | Cronosvirus GAP227 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC109329 | Escherichia phage CLB_P1 | 40218 | 50.052 | Escherichia | Group I | Kayfunavirus | Kayfunavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kayfunavirus | Kayfunavirus CLBP1 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KC117376 | Halorubrum sodomense tailed virus 2 | 68527 | 60.338 | Halorubrum | Group I | Mincapvirus | Mincapvirus | Unclassified | Hafunaviridae | Thumleimavirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Halorubrum sodomense | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_72 |
| KC117377 | Haloarcula vallismortis tailed virus 1 | 102319 | 58.271 | Haloarcula | Group I | Tredecimvirus | Tredecimvirus | Unclassified | Druskaviridae | Thumleimavirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Haloarcula vallismortis | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KC117378 | Haloarcula sinaiiensis tailed virus 1 | 32189 | 60.297 | Haloarcula | Group I | Lonfivirus | Lonfivirus | Unclassified | Shortaselviridae | Kirjokansivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Haloarcula sinaiiensis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KC131021 | Marine gokushovirus | 4129 | 39.574 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 98.840 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown |