INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JX912252 | Escherichia phage ADB-2 | 50552 | 45.555 | Escherichia | Group I | Tunavirus | Tunavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tunavirus | Tunavirus ADB2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| JX944686 | Sulfolobales Mexican rod-shaped virus 1 | 27431 | 46.597 | Unspecified | Group I | Mexirudivirus | Mexirudivirus | Unclassified | Rudiviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Unspecified | Complete | High-quality | 100.000 | ITR (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| JX976549 | Acinetobacter phage vB_AbaM-IME-AB2 | 43665 | 37.497 | Acinetobacter | Group I | Obolenskvirus | Obolenskvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | High-quality | High-quality | 97.300 | AAI-based (high-confidence) | Obolenskvirus | Obolenskvirus AB2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_6 |
| JX997978 | Pseudomonas phage MPK6 | 42957 | 62.279 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 99.730 | AAI-based (high-confidence) | Phikmvvirus | Phikmvvirus MPK6 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC012913 | Staphylococcus phage Team1 | 140903 | 30.327 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus xylosus SMQ121 | High-quality | High-quality | 99.510 | AAI-based (high-confidence) | Kayvirus | Kayvirus G1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC013021 | Leuconostoc phage P793 | 26769 | 36.628 | Leuconostoc | Group I | Limdunavirus | Limdunavirus | Mccleskeyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc pseudomesenteroides BM2 | High-quality | High-quality | 99.730 | AAI-based (high-confidence) | Limdunavirus | Limdunavirus P793 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC013022 | Leuconostoc phage LN03 | 26752 | 36.779 | Leuconostoc | Group I | Limdunavirus | Limdunavirus | Mccleskeyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc pseudomesenteroides LN02 | High-quality | High-quality | 99.490 | AAI-based (high-confidence) | Limdunavirus | Limdunavirus LN03 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC013023 | Leuconostoc phage LN04 | 25865 | 36.598 | Leuconostoc | Group I | Limdunavirus | Limdunavirus | Mccleskeyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc pseudomesenteroides LN02 | High-quality | High-quality | 96.310 | AAI-based (high-confidence) | Limdunavirus | Limdunavirus LN04 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC013024 | Leuconostoc phage phiLN6B | 25740 | 36.465 | Leuconostoc | Group I | Limdunavirus | Limdunavirus | Mccleskeyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc pseudomesenteroides LN02 | High-quality | High-quality | 95.900 | AAI-based (high-confidence) | Limdunavirus | Limdunavirus Lmd1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC013025 | Leuconostoc phage phiLN12 | 28193 | 36.637 | Leuconostoc | Group I | Limdunavirus | Limdunavirus | Mccleskeyvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc pseudomesenteroides LN02 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Limdunavirus | Limdunavirus LN12 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |