INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
JX262219	Propionibacterium phage P105	29202	54.174	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cutibacterium acnes	High-quality	High-quality	99.130	AAI-based (high-confidence)	Pahexavirus	Pahexavirus P105	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX262220	Propionibacterium phage P100D	29506	53.762	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cutibacterium acnes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus P100D	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX262221	Propionibacterium phage P100_A	29505	53.832	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cutibacterium acnes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus P100A	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX262222	Propionibacterium phage P100_1	29612	54.069	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cutibacterium acnes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus P1001	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX262223	Propionibacterium phage P1.1	29348	54.365	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cutibacterium acnes	High-quality	High-quality	99.620	AAI-based (high-confidence)	Pahexavirus	Pahexavirus P11	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX262224	Propionibacterium phage ATCC29399B_T	29516	54.005	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cutibacterium acnes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus ATCC29399BT	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX262225	Propionibacterium phage ATCC29399B_C	29516	53.998	Propionibacterium	Group I	Pahexavirus	Pahexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cutibacterium acnes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus ATCC29399BC	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
JX262376	Streptomyces phage phiELB20	51160	66.986	Streptomyces	Group I	Arequatrovirus	Arequatrovirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Arequatrovirus	Arequatrovirus ELB20	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_28;integrase orf_50
JX274646	Staphylococcus phage SP5	43305	34.446	Staphylococcus	Group I	Dubowvirus	Dubowvirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Dubowvirus	Dubowvirus SP5	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_3;antirepressor orf_6;integrase orf_34
JX274647	Staphylococcus phage SP6	42902	34.539	Staphylococcus	Group I	Dubowvirus	Dubowvirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	99.500	AAI-based (high-confidence)	Dubowvirus	Dubowvirus HSA84	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_3;cro orf_4;antirepressor orf_6;integrase orf_29