INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_030933 | Staphylococcus phage Stau2 | 133798 | 29.974 | Staphylococcus | Group I | Silviavirus | Silviavirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 98.300 | AAI-based (high-confidence) | lytic | ||||
| NC_030934 | Pseudomonas phage vB_PsyM_KIL1 | 90552 | 44.811 | Pseudomonas | Group I | Flaumdravirus | Flaumdravirus | Gorskivirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas syringae pv. porri LMG 28495 | High-quality | High-quality | 93.780 | AAI-based (high-confidence) | lytic | ||||
| NC_030935 | Gordonia phage GRU3 | 17727 | 66.509 | Gordonia | Group I | Grutrevirus | Grutrevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia rubropertincta strain CON38 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_17 | |||
| NC_030936 | Gordonia phage Bachita | 93843 | 61.948 | Gordonia | Group I | Smoothievirus | Smoothievirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_74;immunity orf_76 | |||
| NC_030937 | Xanthomonas phage f30-Xaj | 44262 | 59.882 | Xanthomonas | Group I | Pradovirus | Pradovirus | Gujervirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas arboricola pv. juglandis X-J303 | High-quality | High-quality | 99.550 | AAI-based (high-confidence) | lytic | ||||
| NC_030939 | Gordonia phage GMA4 | 45537 | 66.368 | Gordonia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia malaquae strain BEN700 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_31 | |||
| NC_030940 | Pseudomonas phage phi3 | 32637 | 63.854 | Pseudomonas | Group I | Phitrevirus | Phitrevirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa WH-SGI-V-07174 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;integrase orf_2 | |||
| NC_030941 | Gordonia phage Cozz | 46600 | 60.043 | Gordonia | Group I | Emalynvirus | Emalynvirus | Ceeteevirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_030942 | Gordonia phage BritBrat | 55524 | 64.999 | Gordonia | Group I | Britbratvirus | Britbratvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_35;immunity orf_39;cro orf_40;antirepressor orf_50 | |||
| NC_030943 | Gordonia phage Blueberry | 54990 | 67.030 | Gordonia | Group I | Jujuvirus | Jujuvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_37;immunity orf_41;cro orf_44;antirepressor orf_46 |