INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_028908 | Achromobacter phage phiAxp-3 | 72825 | 55.202 | Achromobacter | Group I | Dongdastvirus | Dongdastvirus | Rothmandenesvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Achromobacter xylosoxidans | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_028910 | Mycobacterium phage XFactor | 55617 | 61.715 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 96.570 | AAI-based (high-confidence) | temperate | immunity orf_37;integrase orf_40;cro orf_43 | |||
| NC_028911 | Lactobacillus phage iLp1308 | 34176 | 45.049 | Lactobacillus | Group I | Colunavirus | Colunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus paracasei | High-quality | High-quality | 90.510 | AAI-based (high-confidence) | temperate | integrase orf_20;cro orf_43 | |||
| NC_028912 | Mycobacterium phage Swirley | 49717 | 61.044 | Mycobacterium | Group I | Benedictvirus | Benedictvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.330 | AAI-based (high-confidence) | temperate | integrase orf_27;immunity orf_63 | |||
| NC_028913 | Staphylococcus phage phinm2 | 43145 | 34.586 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_4;cro orf_5;antirepressor orf_6 | |||
| NC_028914 | Mycobacterium phage Sheen | 52927 | 63.387 | Mycobacterium | Group I | Sheenvirus | Sheenvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_30;immunity orf_67 | |||
| NC_028915 | Staphylococcus phage B236 | 43228 | 35.553 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus NRL 08/236 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_3;cro orf_4;antirepressor orf_5;antirepressor orf_10;integrase orf_38 | |||
| NC_028916 | Proteus phage vB_PmiP_Pm5460 | 44573 | 39.576 | Proteus | Group I | Acadevirus | Acadevirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Proteus mirabilis 414 | High-quality | High-quality | 99.940 | AAI-based (high-confidence) | lytic | ||||
| NC_028917 | Staphylococcus phage 3MRA | 41931 | 35.411 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 97.780 | AAI-based (high-confidence) | temperate | integrase orf_27;antirepressor orf_55;cro orf_59;integrase orf_63 | |||
| NC_028919 | Pseudomonas phage DL54 | 45673 | 52.394 | Pseudomonas | Group I | Bruynoghevirus | Bruynoghevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic |