INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_028898 | Mannheimia phage vB_MhM_587AP1 | 35764 | 42.062 | Mannheimia | Group I | Baylorvirus | Baylorvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mannheimia haemolytica 587A serotype A2 | High-quality | High-quality | 99.550 | AAI-based (high-confidence) | temperate | cro orf_35;cro orf_36;integrase orf_51 | |||
| NC_028899 | Ralstonia phage RSF1 | 222888 | 52.259 | Ralstonia | Group I | Chiangmaivirus | Chiangmaivirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum | High-quality | High-quality | 99.190 | AAI-based (high-confidence) | lytic | ||||
| NC_028900 | Lactococcus phage SL4 | 28144 | 34.967 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis SMQ-404 | High-quality | High-quality | 92.780 | AAI-based (high-confidence) | lytic | ||||
| NC_028901 | Escherichia phage slur05 | 43900 | 54.544 | Escherichia | Group I | Dhillonvirus | Dhillonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 98.160 | AAI-based (high-confidence) | lytic | ||||
| NC_028902 | Qubevirus faecium | 4184 | 51.243 | Unspecified | Group IV | Qubevirus | Qubevirus | Unclassified | Fiersviridae | Norzivirales | Leviviricetes | Lenarviricota | Orthornavirae | Riboviria | Unspecified | High-quality | High-quality | 98.730 | AAI-based (high-confidence) | unknown | ||||
| NC_028903 | Escherichia phage 172-1 | 77266 | 41.984 | Escherichia | Group I | Kuravirus | Kuravirus | Gordonclarkvirinae | Mtkvariviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 172 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_028904 | Streptomyces phage Amela | 49452 | 65.613 | Streptomyces | Group I | Camvirus | Camvirus | Arquatrovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces venezuelae ATCC 10712 | High-quality | High-quality | 99.880 | AAI-based (high-confidence) | temperate | immunity orf_30;integrase orf_51 | |||
| NC_028905 | Clostridium phage phiCD111 | 41560 | 30.893 | Clostridium | Group I | Leicestervirus | Leicestervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | parA orf_31;integrase orf_51 | |||
| NC_028906 | Mycobacterium phage Toto | 75933 | 63.017 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.740 | AAI-based (high-confidence) | temperate | integrase orf_50;immunity orf_53 | |||
| NC_028907 | Mycobacterium phage Kikipoo | 68839 | 66.520 | Mycobacterium | Group I | Pegunavirus | Pegunavirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.080 | AAI-based (high-confidence) | lytic |