INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_025420 | Lactobacillus phage Ld17 | 32975 | 41.498 | Lactobacillus | Group I | Cequinquevirus | Cequinquevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus delbrueckii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_025421 | Lactobacillus phage Ld3 | 29616 | 41.646 | Lactobacillus | Group I | Cequinquevirus | Cequinquevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus delbrueckii | High-quality | High-quality | 92.800 | AAI-based (high-confidence) | lytic | ||||
| NC_025422 | Caulobacter phage Cr30 | 155997 | 37.842 | Caulobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter crescentus CB15 | High-quality | High-quality | 97.100 | AAI-based (high-confidence) | temperate | integrase orf_147 | |||
| NC_025423 | Bacillus phage CP-51 | 138658 | 40.860 | Bacillus | Group I | Siminovitchvirus | Siminovitchvirus | Spounavirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus HER1399 | High-quality | High-quality | 99.970 | AAI-based (high-confidence) | lytic | ||||
| NC_025424 | Bacillus phage Waukesha92 | 45648 | 35.452 | Bacillus | Group I | Waukeshavirus | Waukeshavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis subsp. Kurstaki | High-quality | High-quality | 99.300 | AAI-based (high-confidence) | temperate | antirepressor orf_31;integrase orf_50 | |||
| NC_025425 | Enterobacteria phage GEC-3S | 163424 | 40.549 | Enterobacteria | Group I | Krischvirus | Krischvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O104:H4 | High-quality | High-quality | 98.090 | AAI-based (high-confidence) | lytic | ||||
| NC_025426 | Staphylococcus phage P108 | 140807 | 30.217 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus XN108 | High-quality | High-quality | 99.450 | AAI-based (high-confidence) | lytic | ||||
| NC_025427 | Rhizobium phage vB_RleM_PPF1 | 54506 | 61.900 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium leguminosarum strain F1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_41 | |||
| NC_025428 | Ruegeria phage DSS3-P1 | 59601 | 64.133 | Ruegeria | Group I | Casjensviridae | Unclassified | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ruegeria pomeroyi DSS-3 | High-quality | High-quality | 97.100 | AAI-based (high-confidence) | temperate | integrase orf_68 | |||
| NC_025429 | Rhizobium phage vB_RleM_P10VF | 156446 | 49.877 | Rhizobium | Group I | Innesvirus | Innesvirus | Unclassified | Pootjesviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium leguminosarum biovar viciae VF39 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic |