INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_024793 | Escherichia phage vB_EcoS_AHP42 | 46847 | 43.977 | Escherichia | Group I | Rogunavirus | Rogunavirus | Rogunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | E. coli O157:H7 R508 (phage type 14) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_024794 | Escherichia phage vB_EcoM_PhAPEC2 | 167318 | 37.725 | Escherichia | Group I | Mosigvirus | Mosigvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 98.610 | AAI-based (high-confidence) | lytic | ||||
| NC_025115 | Ralstonia phage RSY1 | 40002 | 64.822 | Ralstonia | Group I | Arsyunavirus | Arsyunavirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_48 | |||
| NC_025375 | Stygiolobus rod-shaped virus | 28096 | 29.275 | Stygiolobus | Group I | Azorudivirus | Azorudivirus | Unclassified | Rudiviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Unspecified | Complete | High-quality | 100.000 | ITR (high-confidence) | lytic | ||||
| NC_025414 | Citrobacter phage Miller | 178171 | 43.130 | Citrobacter | Group I | Pseudotevenvirus | Pseudotevenvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.910 | AAI-based (high-confidence) | lytic | ||||
| NC_025415 | Lactobacillus phage Ld25A | 32799 | 41.663 | Lactobacillus | Group I | Cequinquevirus | Cequinquevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus delbrueckii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_22;antirepressor orf_36 | |||
| NC_025416 | Staphylococcus phage MCE-2014 | 141907 | 30.385 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus BCP88 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_025417 | Staphylococcus phage Team1 | 140903 | 30.327 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus xylosus SMQ121 | High-quality | High-quality | 99.510 | AAI-based (high-confidence) | lytic | ||||
| NC_025418 | Klebsiella phage NTUH-K2044-K1-1 | 43871 | 54.179 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.950 | AAI-based (high-confidence) | lytic | ||||
| NC_025419 | Escherichia phage RB3 | 168402 | 35.374 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli B | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic |